RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ATP2B2Q01814 1243 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 USP17L24Q0WX57 530 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 TTC39AQ5SRH9 613 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 LPAR1Q92633 364 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 FEZ1Q99689 392 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 PRKAG2Q9UGJ0 569 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 VCANP13611 3396 aa24.93■■□□□ 1.58
SQSTM1-215ENST00000514093 CDK5RAP2Q96SN8 1893 aa24.92■■□□□ 1.58
SQSTM1-215ENST00000514093 EYSQ5T1H1 3165 aa24.92■■□□□ 1.58
SQSTM1-215ENST00000514093 SLC15A5A6NIM6 579 aa24.92■■□□□ 1.58
SQSTM1-215ENST00000514093 TRPV1Q8NER1 839 aa24.92■■□□□ 1.58
SQSTM1-215ENST00000514093 CDX2Q99626 313 aaPredicted RBP24.92■■□□□ 1.58
SQSTM1-215ENST00000514093 BTBD7Q9P203 1132 aa24.92■■□□□ 1.58
SQSTM1-215ENST00000514093 ATP11BQ9Y2G3 1177 aa24.92■■□□□ 1.58
SQSTM1-215ENST00000514093 MAST2Q6P0Q8 1798 aa24.92■■□□□ 1.58
SQSTM1-215ENST00000514093 SHHQ15465 462 aa24.91■■□□□ 1.58
SQSTM1-215ENST00000514093 GJC2Q5T442 439 aaPredicted RBP24.91■■□□□ 1.58
SQSTM1-215ENST00000514093 CATSPERGQ6ZRH7 1159 aa24.91■■□□□ 1.58
SQSTM1-215ENST00000514093 C12orf42Q96LP6 360 aa24.91■■□□□ 1.58
SQSTM1-215ENST00000514093 DBNDD2Q9BQY9 259 aa24.91■■□□□ 1.58
SQSTM1-215ENST00000514093 RAB3GAP1Q15042 981 aa24.9■■□□□ 1.58
SQSTM1-215ENST00000514093 C9orf50Q5SZB4 431 aa24.9■■□□□ 1.58
SQSTM1-215ENST00000514093 ANO1Q5XXA6 986 aa24.9■■□□□ 1.58
SQSTM1-215ENST00000514093 ACER1Q8TDN7 264 aa24.9■■□□□ 1.58
SQSTM1-215ENST00000514093 PIH1D3Q9NQM4 214 aaKnown RBP24.9■■□□□ 1.58
SQSTM1-215ENST00000514093 DNM1LO00429 736 aa24.89■■□□□ 1.58
SQSTM1-215ENST00000514093 MSCO60682 206 aa24.89■■□□□ 1.58
SQSTM1-215ENST00000514093 ZAP70P43403 619 aa24.89■■□□□ 1.58
SQSTM1-215ENST00000514093 ATF7IPQ6VMQ6 1270 aa24.89■■□□□ 1.58
SQSTM1-215ENST00000514093 SEMA6BQ9H3T3 888 aa24.89■■□□□ 1.58
SQSTM1-215ENST00000514093 TNNQ9UQP3 1299 aa24.89■■□□□ 1.58
SQSTM1-215ENST00000514093 IVNS1ABPQ9Y6Y0 642 aa24.89■■□□□ 1.58
SQSTM1-215ENST00000514093 FOCADQ5VW36 1801 aa24.89■■□□□ 1.57
SQSTM1-215ENST00000514093 ZNF316A6NFI3 1004 aaPredicted RBP24.88■■□□□ 1.57
SQSTM1-215ENST00000514093 GNAI2P04899 355 aa24.88■■□□□ 1.57
SQSTM1-215ENST00000514093 CT47B1P0C2W7 299 aaPredicted RBP24.88■■□□□ 1.57
SQSTM1-215ENST00000514093 VCAM1P19320 739 aa24.88■■□□□ 1.57
SQSTM1-215ENST00000514093 RARSP54136 660 aaKnown RBP24.88■■□□□ 1.57
SQSTM1-215ENST00000514093 GRB14Q14449 540 aa24.88■■□□□ 1.57
SQSTM1-215ENST00000514093 CCDC158Q5M9N0 1113 aa24.88■■□□□ 1.57
SQSTM1-215ENST00000514093 MIGA1Q8NAN2 632 aa24.88■■□□□ 1.57
SQSTM1-215ENST00000514093 PRDM5Q9NQX1 630 aaPredicted RBP24.88■■□□□ 1.57
SQSTM1-215ENST00000514093 MYO5AQ9Y4I1 1855 aaKnown RBP24.87■■□□□ 1.57
SQSTM1-215ENST00000514093 MYCNP04198 464 aaPredicted RBP24.87■■□□□ 1.57
SQSTM1-215ENST00000514093 HOXC6P09630 235 aa24.87■■□□□ 1.57
SQSTM1-215ENST00000514093 CYP7A1P22680 504 aa24.87■■□□□ 1.57
SQSTM1-215ENST00000514093 TNNI3KQ59H18 835 aa24.87■■□□□ 1.57
SQSTM1-215ENST00000514093 TATDN1Q6P1N9 297 aa24.87■■□□□ 1.57
SQSTM1-215ENST00000514093 MAFAQ8NHW3 353 aaPredicted RBP24.87■■□□□ 1.57
SQSTM1-215ENST00000514093 FPGT-TNNI3KV9GXZ4 949 aa24.87■■□□□ 1.57
SQSTM1-215ENST00000514093 USP14P54578 494 aa24.86■■□□□ 1.57
SQSTM1-215ENST00000514093 SLC39A5Q6ZMH5 540 aa24.86■■□□□ 1.57
SQSTM1-215ENST00000514093 MYLIPQ8WY64 445 aa24.86■■□□□ 1.57
SQSTM1-215ENST00000514093 ARHGAP45Q92619 1136 aa24.86■■□□□ 1.57
SQSTM1-215ENST00000514093 BADQ92934 168 aa24.86■■□□□ 1.57
SQSTM1-215ENST00000514093 LTBP2Q14767 1821 aa24.86■■□□□ 1.57
SQSTM1-215ENST00000514093 SPDYE16A6NNV3 312 aaPredicted RBP24.85■■□□□ 1.57
SQSTM1-215ENST00000514093 CYBAP13498 195 aa24.85■■□□□ 1.57
SQSTM1-215ENST00000514093 USP5P45974 858 aa24.85■■□□□ 1.57
SQSTM1-215ENST00000514093 CERKLQ49MI3 558 aaPredicted RBP24.85■■□□□ 1.57
SQSTM1-215ENST00000514093 DPP9Q86TI2 863 aa24.85■■□□□ 1.57
SQSTM1-215ENST00000514093 KIAA1683Q9H0B3 1180 aa24.85■■□□□ 1.57
SQSTM1-215ENST00000514093 RPAP3Q9H6T3 665 aaPredicted RBP24.85■■□□□ 1.57
SQSTM1-215ENST00000514093 SPTBN5Q9NRC6 3674 aaKnown RBP24.85■■□□□ 1.57
SQSTM1-215ENST00000514093 ABCB5Q2M3G0 1257 aa24.84■■□□□ 1.57
SQSTM1-215ENST00000514093 TTYH1Q9H313 450 aaPredicted RBP24.84■■□□□ 1.57
SQSTM1-215ENST00000514093 SERPINB13Q9UIV8 391 aa24.84■■□□□ 1.57
SQSTM1-215ENST00000514093 IGHA2P01877 340 aa24.83■■□□□ 1.57
SQSTM1-215ENST00000514093 OS9Q13438 667 aaPredicted RBP24.83■■□□□ 1.57
SQSTM1-215ENST00000514093 TRIM60Q495X7 471 aa24.83■■□□□ 1.57
SQSTM1-215ENST00000514093 LBX2Q6XYB7 198 aa24.83■■□□□ 1.57
SQSTM1-215ENST00000514093 SH3RF1Q7Z6J0 888 aa24.83■■□□□ 1.57
SQSTM1-215ENST00000514093 ARRDC4Q8NCT1 418 aa24.83■■□□□ 1.57
SQSTM1-215ENST00000514093 GPR108Q9NPR9 543 aa24.83■■□□□ 1.57
SQSTM1-215ENST00000514093 MYH1P12882 1939 aa24.82■■□□□ 1.56
SQSTM1-215ENST00000514093 KBTBD13C9JR72 458 aa24.82■■□□□ 1.56
SQSTM1-215ENST00000514093 IDH1O75874 414 aaKnown RBP24.82■■□□□ 1.56
SQSTM1-215ENST00000514093 ADORA2AP29274 412 aa24.82■■□□□ 1.56
SQSTM1-215ENST00000514093 PRAMEF19Q5SWL8 479 aa24.82■■□□□ 1.56
SQSTM1-215ENST00000514093 FERMT2Q96AC1 680 aa24.82■■□□□ 1.56
SQSTM1-215ENST00000514093 PRUNE2Q8WUY3 3088 aa24.82■■□□□ 1.56
SQSTM1-215ENST00000514093 RLFQ13129 1914 aa24.81■■□□□ 1.56
SQSTM1-215ENST00000514093 TRIM27P14373 513 aa24.81■■□□□ 1.56
SQSTM1-215ENST00000514093 CLUAP1Q96AJ1 413 aa24.81■■□□□ 1.56
SQSTM1-215ENST00000514093 MOV10L1Q9BXT6 1211 aaKnown RBP24.81■■□□□ 1.56
SQSTM1-215ENST00000514093 CABP5Q9NP86 173 aa24.81■■□□□ 1.56
SQSTM1-215ENST00000514093 TLR7Q9NYK1 1049 aaKnown RBP24.81■■□□□ 1.56
SQSTM1-215ENST00000514093 TRIM43BA6NCK2 446 aa24.8■■□□□ 1.56
SQSTM1-215ENST00000514093 COBLO75128 1261 aa24.8■■□□□ 1.56
SQSTM1-215ENST00000514093 GUCY1A2P33402 732 aa24.8■■□□□ 1.56
SQSTM1-215ENST00000514093 ADCYAP1R1P41586 468 aa24.8■■□□□ 1.56
SQSTM1-215ENST00000514093 PLCD1P51178 756 aa24.8■■□□□ 1.56
SQSTM1-215ENST00000514093 MAGEB6Q8N7X4 407 aa24.8■■□□□ 1.56
SQSTM1-215ENST00000514093 TRIM43Q96BQ3 446 aaPredicted RBP24.8■■□□□ 1.56
SQSTM1-215ENST00000514093 CCDC8Q9H0W5 538 aaPredicted RBP24.8■■□□□ 1.56
SQSTM1-215ENST00000514093 EHD4Q9H223 541 aa24.8■■□□□ 1.56
SQSTM1-215ENST00000514093 PDLIM7Q9NR12 457 aa24.8■■□□□ 1.56
SQSTM1-215ENST00000514093 CDH23Q9H251 3354 aa24.79■■□□□ 1.56
SQSTM1-215ENST00000514093 SHMT1P34896 483 aa24.79■■□□□ 1.56
SQSTM1-215ENST00000514093 SEPT2Q15019 361 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms