RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 CCDC73Q6ZRK6 1079 aa17.28■□□□□ 0.36
VCAN-211ENST00000513984 DEFB132Q7Z7B7 95 aa17.28■□□□□ 0.36
VCAN-211ENST00000513984 ENGASEQ8NFI3 743 aa17.28■□□□□ 0.36
VCAN-211ENST00000513984 TEKT1Q969V4 418 aa17.28■□□□□ 0.36
VCAN-211ENST00000513984 PDGFDQ9GZP0 370 aaPredicted RBP17.28■□□□□ 0.36
VCAN-211ENST00000513984 KCNJ14Q9UNX9 436 aa17.28■□□□□ 0.36
VCAN-211ENST00000513984 PLIN4Q96Q06 1357 aa17.27■□□□□ 0.36
VCAN-211ENST00000513984 ECE2O60344 883 aa17.27■□□□□ 0.36
VCAN-211ENST00000513984 WDHD1O75717 1129 aaPredicted RBP17.27■□□□□ 0.36
VCAN-211ENST00000513984 XBP1P17861 261 aa17.27■□□□□ 0.36
VCAN-211ENST00000513984 KIF5BP33176 963 aa17.27■□□□□ 0.36
VCAN-211ENST00000513984 FAM160A1Q05DH4 1040 aa17.27■□□□□ 0.36
VCAN-211ENST00000513984 SNW1Q13573 536 aaKnown RBP17.27■□□□□ 0.36
VCAN-211ENST00000513984 SRBD1Q8N5C6 995 aaKnown RBP17.27■□□□□ 0.36
VCAN-211ENST00000513984 RNF214Q8ND24 703 aa17.27■□□□□ 0.36
VCAN-211ENST00000513984 PNMA1Q8ND90 353 aa17.27■□□□□ 0.36
VCAN-211ENST00000513984 MRPS27Q92552 414 aaKnown RBP17.27■□□□□ 0.36
VCAN-211ENST00000513984 MRIQ9BWK5 157 aa17.27■□□□□ 0.36
VCAN-211ENST00000513984 SIPA1L1O43166 1804 aa17.27■□□□□ 0.35
VCAN-211ENST00000513984 USP17L3A6NCW0 530 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 USP17L4A6NCW7 530 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 BTBD18B2RXH4 712 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 CCDC192P0DO97 292 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 PTPAQ15257 358 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 SF3A1Q15459 793 aaKnown RBP17.26■□□□□ 0.35
VCAN-211ENST00000513984 CAMK4Q16566 473 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 DACT2Q5SW24 774 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 USP17L1Q7RTZ2 530 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 FSIP1Q8NA03 581 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 NEDD1Q8NHV4 660 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 SLC16A10Q8TF71 515 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 SHISA4Q96DD7 197 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 V9GY48 417 aaPredicted RBP17.26■□□□□ 0.35
VCAN-211ENST00000513984 PPP6R2O75170 966 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 SCNN1DP51172 638 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 KIAA2012Q0VF49 1180 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 GRM4Q14833 912 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 UVSSAQ2YD98 709 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 SUPT20HQ8NEM7 779 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 PHF20Q9BVI0 1012 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 DDX4Q9NQI0 724 aaKnown RBP17.26■□□□□ 0.35
VCAN-211ENST00000513984 KCNQ5Q9NR82 932 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 ZNF219Q9P2Y4 722 aaPredicted RBP17.26■□□□□ 0.35
VCAN-211ENST00000513984 TAOK2Q9UL54 1235 aa17.26■□□□□ 0.35
VCAN-211ENST00000513984 HDLBPQ00341 1268 aaKnown RBP17.25■□□□□ 0.35
VCAN-211ENST00000513984 GABPAQ06546 454 aa17.25■□□□□ 0.35
VCAN-211ENST00000513984 GRIPAP1Q4V328 841 aa17.25■□□□□ 0.35
VCAN-211ENST00000513984 AXDND1Q5T1B0 1012 aaPredicted RBP17.25■□□□□ 0.35
VCAN-211ENST00000513984 APOBEC3HQ6NTF7 200 aaKnown RBP17.25■□□□□ 0.35
VCAN-211ENST00000513984 CDC42EP5Q6NZY7 148 aa17.25■□□□□ 0.35
VCAN-211ENST00000513984 PDLIM2Q96JY6 352 aa17.25■□□□□ 0.35
VCAN-211ENST00000513984 ZDHHC15Q96MV8 337 aa17.25■□□□□ 0.35
VCAN-211ENST00000513984 USP40Q9NVE5 1235 aa17.25■□□□□ 0.35
VCAN-211ENST00000513984 MYH4Q9Y623 1939 aa17.25■□□□□ 0.35
VCAN-211ENST00000513984 CTAGE5O15320 804 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 CRKP46108 304 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 NOVP48745 357 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 PICALMQ13492 652 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 FMR1NBQ8N0W7 255 aaPredicted RBP17.24■□□□□ 0.35
VCAN-211ENST00000513984 JMYQ8N9B5 988 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.24■□□□□ 0.35
VCAN-211ENST00000513984 VPS54Q9P1Q0 977 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 MYO3BQ8WXR4 1341 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 GNAQP50148 359 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 AOC3Q16853 763 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 RILPL1Q5EBL4 403 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 CKAP2LQ8IYA6 745 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 TMEM47Q9BQJ4 181 aa17.24■□□□□ 0.35
VCAN-211ENST00000513984 KINO60870 393 aaKnown RBP17.23■□□□□ 0.35
VCAN-211ENST00000513984 SCG2P13521 617 aa17.23■□□□□ 0.35
VCAN-211ENST00000513984 TOB1P50616 345 aaPredicted RBP17.23■□□□□ 0.35
VCAN-211ENST00000513984 TYRO3Q06418 890 aa17.23■□□□□ 0.35
VCAN-211ENST00000513984 NR5A1Q13285 461 aa17.23■□□□□ 0.35
VCAN-211ENST00000513984 PFKFB3Q16875 520 aaPredicted RBP17.23■□□□□ 0.35
VCAN-211ENST00000513984 OSBPL5Q9H0X9 879 aaPredicted RBP17.23■□□□□ 0.35
VCAN-211ENST00000513984 MAD2L2Q9UI95 211 aa17.23■□□□□ 0.35
VCAN-211ENST00000513984 BRCA1P38398 1863 aaKnown RBP17.23■□□□□ 0.35
VCAN-211ENST00000513984 hCG_1642624A0A1W2PR95 340 aa17.22■□□□□ 0.35
VCAN-211ENST00000513984 CMA1P23946 247 aa17.22■□□□□ 0.35
VCAN-211ENST00000513984 KRT2P35908 639 aa17.22■□□□□ 0.35
VCAN-211ENST00000513984 TTLL6Q8N841 843 aa17.22■□□□□ 0.35
VCAN-211ENST00000513984 OXER1Q8TDS5 423 aa17.22■□□□□ 0.35
VCAN-211ENST00000513984 STX8Q9UNK0 236 aa17.22■□□□□ 0.35
VCAN-211ENST00000513984 MRVI1Q9Y6F6 885 aa17.22■□□□□ 0.35
VCAN-211ENST00000513984 A0A1B0GVL5 298 aa17.21■□□□□ 0.35
VCAN-211ENST00000513984 C21orf2O43822 256 aa17.21■□□□□ 0.35
VCAN-211ENST00000513984 NPY5RQ15761 445 aa17.21■□□□□ 0.35
VCAN-211ENST00000513984 KIAA0825Q8IV33 1275 aa17.21■□□□□ 0.35
VCAN-211ENST00000513984 SWAP70Q9UH65 585 aa17.21■□□□□ 0.35
VCAN-211ENST00000513984 PALM3A6NDB9 673 aaPredicted RBP17.21■□□□□ 0.35
VCAN-211ENST00000513984 MARCKSP29966 332 aaPredicted RBP17.21■□□□□ 0.35
VCAN-211ENST00000513984 NDUFA8P51970 172 aa17.21■□□□□ 0.35
VCAN-211ENST00000513984 CCDC93Q567U6 631 aa17.21■□□□□ 0.35
VCAN-211ENST00000513984 STAG2Q8N3U4 1231 aa17.21■□□□□ 0.35
VCAN-211ENST00000513984 CEP95Q96GE4 821 aa17.21■□□□□ 0.35
VCAN-211ENST00000513984 SERPINB13Q9UIV8 391 aa17.21■□□□□ 0.35
VCAN-211ENST00000513984 MORC2Q9Y6X9 1032 aaPredicted RBP17.21■□□□□ 0.35
VCAN-211ENST00000513984 FAM237AA0A1B0GTK4 181 aa17.2■□□□□ 0.34
VCAN-211ENST00000513984 PPIP5K2O43314 1243 aa17.2■□□□□ 0.34
VCAN-211ENST00000513984 TOP1P11387 765 aaKnown RBP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms