RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 DDRGK1Q96HY6 314 aa11.63□□□□□ -0.55
RNF4-221ENST00000513643 FAM227BQ96M60 508 aa11.63□□□□□ -0.55
RNF4-221ENST00000513643 ASCC2Q9H1I8 757 aaPredicted RBP11.63□□□□□ -0.55
RNF4-221ENST00000513643 EFCC1Q9HA90 598 aa11.63□□□□□ -0.55
RNF4-221ENST00000513643 CABP5Q9NP86 173 aa11.63□□□□□ -0.55
RNF4-221ENST00000513643 HPS5Q9UPZ3 1129 aa11.63□□□□□ -0.55
RNF4-221ENST00000513643 BAZ2AQ9UIF9 1905 aaKnown RBP11.62□□□□□ -0.55
RNF4-221ENST00000513643 IGKV6D-41A0A0C4DH26 115 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 A0A0D9SFI3 127 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 GSPT1P15170 499 aaKnown RBP11.62□□□□□ -0.55
RNF4-221ENST00000513643 RASA1P20936 1047 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 RGS19P49795 217 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 PABPC4Q13310 644 aaKnown RBP eCLIP11.62□□□□□ -0.55
RNF4-221ENST00000513643 RAB3GAP1Q15042 981 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 FAM110CQ1W6H9 321 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 MCMDC2Q4G0Z9 681 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 VPS53Q5VIR6 699 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 LBX2Q6XYB7 198 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 CCDC129Q6ZRS4 1044 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 TRIM47Q96LD4 638 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 P2RX7Q99572 595 aaKnown RBP11.62□□□□□ -0.55
RNF4-221ENST00000513643 MORF4L1Q9UBU8 362 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 ANAPC4Q9UJX5 808 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 PNMA3Q9UL41 463 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 TMX2Q9Y320 296 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 TRIM17Q9Y577 477 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 TACC3Q9Y6A5 838 aa11.62□□□□□ -0.55
RNF4-221ENST00000513643 GCLCP48506 637 aaPredicted RBP11.61□□□□□ -0.55
RNF4-221ENST00000513643 USP14P54578 494 aa11.61□□□□□ -0.55
RNF4-221ENST00000513643 PRMT2P55345 433 aa11.61□□□□□ -0.55
RNF4-221ENST00000513643 NMIQ13287 307 aaPredicted RBP11.61□□□□□ -0.55
RNF4-221ENST00000513643 KIAA1755Q5JYT7 1200 aa11.61□□□□□ -0.55
RNF4-221ENST00000513643 CATSPERGQ6ZRH7 1159 aa11.61□□□□□ -0.55
RNF4-221ENST00000513643 ZNF589Q86UQ0 364 aaPredicted RBP11.61□□□□□ -0.55
RNF4-221ENST00000513643 AMOTL1Q8IY63 956 aa11.61□□□□□ -0.55
RNF4-221ENST00000513643 ARMC5Q96C12 935 aa11.61□□□□□ -0.55
RNF4-221ENST00000513643 TMOD4Q9NZQ9 345 aa11.61□□□□□ -0.55
RNF4-221ENST00000513643 RBPJLQ9UBG7 517 aa11.61□□□□□ -0.55
RNF4-221ENST00000513643 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.61□□□□□ -0.55
RNF4-221ENST00000513643 ZMYM6O95789 1325 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 FGAP02671 866 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 HSPD1P10809 573 aaKnown RBP11.6□□□□□ -0.55
RNF4-221ENST00000513643 VCAM1P19320 739 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 OSBPP22059 807 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 PSMC4P43686 418 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 NOVP48745 357 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 ARHGEF6Q15052 776 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 TTC22Q5TAA0 569 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 MKL1Q969V6 931 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 NACAP1Q9BZK3 213 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 KANSL2Q9H9L4 492 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 TXNRD2Q9NNW7 524 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 SRRDQ9UH36 339 aa11.6□□□□□ -0.55
RNF4-221ENST00000513643 PLIN4Q96Q06 1357 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 GREB1LQ9C091 1923 aaPredicted RBP11.59□□□□□ -0.55
RNF4-221ENST00000513643 MINDY4BA8MYZ0 360 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 TRIM6-TRIM34B2RNG4 842 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 USP17L15C9J2P7 530 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 USP17L13C9JLJ4 530 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 USP17L11C9JVI0 530 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 USP17L18D6R9N7 530 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 USP17L22D6RA61 530 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 USP17L17D6RBQ6 530 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 USP17L19D6RCP7 530 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 USP17L20D6RJB6 530 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 CNMDO75829 334 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 APPP05067 770 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 TDO2P48775 406 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 HERVK_113P62684 666 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 PPARAQ07869 468 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 USP17L24Q0WX57 530 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 CLEC10AQ8IUN9 316 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 NEDD1Q8NHV4 660 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 RILPL2Q969X0 211 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 NYAP2Q9P242 653 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 SYNPO2Q9UMS6 1093 aa11.59□□□□□ -0.55
RNF4-221ENST00000513643 KIAA0100Q14667 2235 aaKnown RBP11.59□□□□□ -0.55
RNF4-221ENST00000513643 MPHOSPH10O00566 681 aaKnown RBP11.58□□□□□ -0.56
RNF4-221ENST00000513643 EEF2P13639 858 aaKnown RBP11.58□□□□□ -0.56
RNF4-221ENST00000513643 ICA1Q05084 483 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 KIF22Q14807 665 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 Q3C1V9 767 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 ANKRD13CQ8N6S4 541 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 SMCR8Q8TEV9 937 aaPredicted RBP11.58□□□□□ -0.56
RNF4-221ENST00000513643 GTF3C2Q8WUA4 911 aaPredicted RBP11.58□□□□□ -0.56
RNF4-221ENST00000513643 LPAR1Q92633 364 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 NBPF3Q9H094 633 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 NAPBQ9H115 298 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 IL25Q9H293 177 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 VCPKMTQ9H867 229 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 GJD2Q9UKL4 321 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 ADAMTS5Q9UNA0 930 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 PTCH2Q9Y6C5 1203 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 CCDC171Q6TFL3 1326 aa11.58□□□□□ -0.56
RNF4-221ENST00000513643 SPDYE16A6NNV3 312 aaPredicted RBP11.57□□□□□ -0.56
RNF4-221ENST00000513643 HIP1O00291 1037 aa11.57□□□□□ -0.56
RNF4-221ENST00000513643 ORC4O43929 436 aa11.57□□□□□ -0.56
RNF4-221ENST00000513643 FCGRTP55899 365 aa11.57□□□□□ -0.56
RNF4-221ENST00000513643 IRX3P78415 501 aaPredicted RBP11.57□□□□□ -0.56
RNF4-221ENST00000513643 IRF5Q13568 498 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms