RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 BAIAP2L1Q9UHR4 511 aa3.97□□□□□ -1.77
USP53-205ENST00000509769 G3BP2Q9UN86 482 aaKnown RBP3.97□□□□□ -1.77
USP53-205ENST00000509769 GUCY1B2O75343 617 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 XRCC6P12956 609 aaKnown RBP eCLIP3.96□□□□□ -1.77
USP53-205ENST00000509769 ATP2B1P20020 1258 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 EEF1DP29692 281 aaKnown RBP3.96□□□□□ -1.77
USP53-205ENST00000509769 SLC4A3P48751 1232 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 BNC1Q01954 994 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 MAP3K10Q02779 954 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 SCRN3Q0VDG4 424 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 RUNDC3AQ59EK9 446 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 ANKRD20A3Q5VUR7 823 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 CROCCP3Q8IVE0 287 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 SMC5Q8IY18 1101 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.96□□□□□ -1.77
USP53-205ENST00000509769 KRI1Q8N9T8 703 aaKnown RBP3.96□□□□□ -1.77
USP53-205ENST00000509769 C3orf20Q8ND61 904 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 ACRBPQ8NEB7 543 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.96□□□□□ -1.77
USP53-205ENST00000509769 MPHOSPH9Q99550 1183 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 NAPGQ99747 312 aaPredicted RBP3.96□□□□□ -1.77
USP53-205ENST00000509769 THUMPD2Q9BTF0 503 aaKnown RBP3.96□□□□□ -1.77
USP53-205ENST00000509769 NUP58Q9BVL2 599 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 CAPS2Q9BXY5 557 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 BRD8Q9H0E9 1235 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 PDP2Q9P2J9 529 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 RNF14Q9UBS8 474 aa3.96□□□□□ -1.77
USP53-205ENST00000509769 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.96□□□□□ -1.77
USP53-205ENST00000509769 ARHGAP31Q2M1Z3 1444 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 STXBP3O00186 592 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 TRAF5O00463 557 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 ALDH1L1O75891 902 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 SNUPNO95149 360 aaKnown RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 U2AF1L5P0DN76 240 aaPredicted RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 STAT2P52630 851 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 ZC3H6P61129 1189 aaKnown RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 U2AF1Q01081 240 aaKnown RBP eCLIP3.96□□□□□ -1.78
USP53-205ENST00000509769 ICA1Q05084 483 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 FOXD4L5Q5VV16 416 aaPredicted RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 BICDL1Q6ZP65 573 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 MCM10Q7L590 875 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 TLK2Q86UE8 772 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 MFN1Q8IWA4 741 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 EXOC8Q8IYI6 725 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 PM20D2Q8IYS1 436 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 FOXD4L4Q8WXT5 416 aaPredicted RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 USP28Q96RU2 1077 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 NUP88Q99567 741 aaPredicted RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 SERPINI1Q99574 410 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 CCDC90BQ9GZT6 254 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 RAB17Q9H0T7 212 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 TSC22D4Q9Y3Q8 395 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 MAD1L1Q9Y6D9 718 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 EVC2Q86UK5 1308 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 BCL9LQ86UU0 1499 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 IQANK1A0A1B0GTG1 560 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 A0A1B0GVL5 298 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 DYTNA2CJ06 578 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 AXIN1O15169 862 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 HNRNPRO43390 633 aaKnown RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 DAB1O75553 588 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 ABCD1P33897 745 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 ZNF165P49910 485 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 PURAQ00577 322 aaKnown RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 TAF11Q15544 211 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 ZSCAN23Q3MJ62 389 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 C6orf118Q5T5N4 469 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 NXNQ6DKJ4 435 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 PPP4R3AQ6IN85 833 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 LRRC8BQ6P9F7 803 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 BRINP3Q76B58 766 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 HDDC2Q7Z4H3 204 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 SRRM1Q8IYB3 904 aaKnown RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 CCDC197Q8NCU1 140 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 RABGGTAQ92696 567 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 RUNDC1Q96C34 613 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 ZNF830Q96NB3 372 aaPredicted RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 ZHX3Q9H4I2 956 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 NDE1Q9NXR1 346 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 TRIM17Q9Y577 477 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 BZW2Q9Y6E2 419 aaKnown RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 SNAPC5O75971 98 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 VPS41P49754 854 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 CC2D2BQ6DHV5 1058 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 PPP4R4Q6NUP7 873 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 TUBA3EQ6PEY2 450 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 FRA10AC1Q70Z53 315 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 UBL4BQ8N7F7 174 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 DTX3LQ8TDB6 740 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 TEKT1Q969V4 418 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 FGD4Q96M96 766 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 OLFM1Q99784 485 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 TANGO6Q9C0B7 1094 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 DISC1Q9NRI5 854 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 ETAA1Q9NY74 926 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 PSD3Q9NYI0 1048 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 MRFAP1Q9Y605 127 aa3.96□□□□□ -1.78
USP53-205ENST00000509769 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.96□□□□□ -1.78
USP53-205ENST00000509769 PTPN23Q9H3S7 1636 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 EIF2AK4Q9P2K8 1649 aaKnown RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms