RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 KIAA1683Q9H0B3 1180 aa21.61■■□□□ 1.05
TPM3-220ENST00000509601 SLC4A4Q9Y6R1 1079 aa21.61■■□□□ 1.05
TPM3-220ENST00000509601 NAV1Q8NEY1 1877 aa21.6■■□□□ 1.05
TPM3-220ENST00000509601 A0A1W2PRG0 241 aa21.6■■□□□ 1.05
TPM3-220ENST00000509601 USP14P54578 494 aa21.6■■□□□ 1.05
TPM3-220ENST00000509601 ZYXQ15942 572 aaKnown RBP21.6■■□□□ 1.05
TPM3-220ENST00000509601 CATSPERGQ6ZRH7 1159 aa21.6■■□□□ 1.05
TPM3-220ENST00000509601 SIAH1Q8IUQ4 282 aa21.6■■□□□ 1.05
TPM3-220ENST00000509601 OSBP2Q969R2 916 aa21.6■■□□□ 1.05
TPM3-220ENST00000509601 SWAP70Q9UH65 585 aa21.6■■□□□ 1.05
TPM3-220ENST00000509601 TAOK2Q9UL54 1235 aa21.6■■□□□ 1.05
TPM3-220ENST00000509601 USP17L15C9J2P7 530 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 USP17L13C9JLJ4 530 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 USP17L11C9JVI0 530 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 USP17L18D6R9N7 530 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 USP17L22D6RA61 530 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 USP17L17D6RBQ6 530 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 USP17L19D6RCP7 530 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 USP17L20D6RJB6 530 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 CCL5P13501 91 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 ELNP15502 786 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 USP17L24Q0WX57 530 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 CTR9Q6PD62 1173 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 GPRC5AQ8NFJ5 357 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 PI4K2BQ8TCG2 481 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 GPATCH3Q96I76 525 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 BIN2Q9UBW5 565 aaPredicted RBP21.59■■□□□ 1.05
TPM3-220ENST00000509601 MYH7P12883 1935 aa21.59■■□□□ 1.05
TPM3-220ENST00000509601 TTC41PQ6P2S7 1318 aa21.58■■□□□ 1.05
TPM3-220ENST00000509601 RNF113AO15541 343 aaKnown RBP21.58■■□□□ 1.05
TPM3-220ENST00000509601 CDK8P49336 464 aa21.58■■□□□ 1.05
TPM3-220ENST00000509601 FEZ1Q99689 392 aa21.58■■□□□ 1.05
TPM3-220ENST00000509601 BAZ2AQ9UIF9 1905 aaKnown RBP21.58■■□□□ 1.04
TPM3-220ENST00000509601 GSG1L2A8MUP6 293 aa21.57■■□□□ 1.04
TPM3-220ENST00000509601 MPHOSPH10O00566 681 aaKnown RBP21.57■■□□□ 1.04
TPM3-220ENST00000509601 GJB1P08034 283 aa21.57■■□□□ 1.04
TPM3-220ENST00000509601 AKR1B1P15121 316 aa21.57■■□□□ 1.04
TPM3-220ENST00000509601 UBXN2AP68543 259 aa21.57■■□□□ 1.04
TPM3-220ENST00000509601 PRPF38BQ5VTL8 546 aaKnown RBP21.57■■□□□ 1.04
TPM3-220ENST00000509601 SHISA4Q96DD7 197 aa21.57■■□□□ 1.04
TPM3-220ENST00000509601 RNF208Q9H0X6 261 aa21.57■■□□□ 1.04
TPM3-220ENST00000509601 UNC93B1Q9H1C4 597 aa21.57■■□□□ 1.04
TPM3-220ENST00000509601 CNMDO75829 334 aa21.56■■□□□ 1.04
TPM3-220ENST00000509601 VCAM1P19320 739 aa21.56■■□□□ 1.04
TPM3-220ENST00000509601 HDAC1Q13547 482 aaPredicted RBP21.56■■□□□ 1.04
TPM3-220ENST00000509601 TMEM179Q6ZVK1 233 aa21.56■■□□□ 1.04
TPM3-220ENST00000509601 C16orf86Q6ZW13 317 aa21.56■■□□□ 1.04
TPM3-220ENST00000509601 APPBP2Q92624 585 aa21.56■■□□□ 1.04
TPM3-220ENST00000509601 SALL3Q9BXA9 1300 aa21.55■■□□□ 1.04
TPM3-220ENST00000509601 INHAP05111 366 aa21.55■■□□□ 1.04
TPM3-220ENST00000509601 GJA8P48165 433 aa21.55■■□□□ 1.04
TPM3-220ENST00000509601 ERVK-9P63128 1117 aa21.55■■□□□ 1.04
TPM3-220ENST00000509601 ERVK-24P63145 666 aa21.55■■□□□ 1.04
TPM3-220ENST00000509601 KIAA1755Q5JYT7 1200 aa21.55■■□□□ 1.04
TPM3-220ENST00000509601 ANKRD45Q5TZF3 282 aa21.55■■□□□ 1.04
TPM3-220ENST00000509601 GTF3C2Q8WUA4 911 aaPredicted RBP21.55■■□□□ 1.04
TPM3-220ENST00000509601 CCDC17Q96LX7 622 aa21.55■■□□□ 1.04
TPM3-220ENST00000509601 PORCNQ9H237 461 aa21.55■■□□□ 1.04
TPM3-220ENST00000509601 ERC2O15083 957 aa21.54■■□□□ 1.04
TPM3-220ENST00000509601 GLRX3O76003 335 aaKnown RBP21.54■■□□□ 1.04
TPM3-220ENST00000509601 ZFYP08048 801 aaPredicted RBP21.54■■□□□ 1.04
TPM3-220ENST00000509601 SBK1Q52WX2 424 aa21.54■■□□□ 1.04
TPM3-220ENST00000509601 DDRGK1Q96HY6 314 aa21.54■■□□□ 1.04
TPM3-220ENST00000509601 PAGR1Q9BTK6 254 aa21.54■■□□□ 1.04
TPM3-220ENST00000509601 RABGAP1Q9Y3P9 1069 aa21.54■■□□□ 1.04
TPM3-220ENST00000509601 M0R2C6 588 aa21.53■■□□□ 1.04
TPM3-220ENST00000509601 MX1P20591 662 aa21.53■■□□□ 1.04
TPM3-220ENST00000509601 GIMAP6Q6P9H5 292 aa21.53■■□□□ 1.04
TPM3-220ENST00000509601 LBX2Q6XYB7 198 aa21.53■■□□□ 1.04
TPM3-220ENST00000509601 CLEC10AQ8IUN9 316 aa21.53■■□□□ 1.04
TPM3-220ENST00000509601 RPAP3Q9H6T3 665 aaPredicted RBP21.53■■□□□ 1.04
TPM3-220ENST00000509601 GPAA1O43292 621 aa21.52■■□□□ 1.04
TPM3-220ENST00000509601 SGPL1O95470 568 aa21.52■■□□□ 1.04
TPM3-220ENST00000509601 MAPK4P31152 587 aa21.52■■□□□ 1.04
TPM3-220ENST00000509601 AMOTL1Q8IY63 956 aa21.52■■□□□ 1.04
TPM3-220ENST00000509601 NKX2-3Q8TAU0 364 aa21.52■■□□□ 1.04
TPM3-220ENST00000509601 USP6NLQ92738 828 aa21.52■■□□□ 1.04
TPM3-220ENST00000509601 GCC1Q96CN9 775 aa21.52■■□□□ 1.04
TPM3-220ENST00000509601 SEC62Q99442 399 aaKnown RBP21.52■■□□□ 1.04
TPM3-220ENST00000509601 BTBD7Q9P203 1132 aa21.52■■□□□ 1.04
TPM3-220ENST00000509601 TMX2Q9Y320 296 aa21.52■■□□□ 1.04
TPM3-220ENST00000509601 PLXNB2O15031 1838 aa21.52■■□□□ 1.04
TPM3-220ENST00000509601 SPDYE16A6NNV3 312 aaPredicted RBP21.51■■□□□ 1.03
TPM3-220ENST00000509601 CYP2B6P20813 491 aa21.51■■□□□ 1.03
TPM3-220ENST00000509601 TRIM32Q13049 653 aa21.51■■□□□ 1.03
TPM3-220ENST00000509601 UBE2Q1Q7Z7E8 422 aa21.51■■□□□ 1.03
TPM3-220ENST00000509601 U2AF1L4Q8WU68 220 aaKnown RBP21.51■■□□□ 1.03
TPM3-220ENST00000509601 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.51■■□□□ 1.03
TPM3-220ENST00000509601 EPB41L4AQ9HCS5 686 aaPredicted RBP21.51■■□□□ 1.03
TPM3-220ENST00000509601 ARPP21Q9UBL0 812 aaPredicted RBP21.51■■□□□ 1.03
TPM3-220ENST00000509601 PATL2C9JE40 543 aaKnown RBP21.5■■□□□ 1.03
TPM3-220ENST00000509601 COG2Q14746 738 aa21.5■■□□□ 1.03
TPM3-220ENST00000509601 MORN1Q5T089 497 aa21.5■■□□□ 1.03
TPM3-220ENST00000509601 GPR142Q7Z601 462 aa21.5■■□□□ 1.03
TPM3-220ENST00000509601 NUDT12Q9BQG2 462 aa21.5■■□□□ 1.03
TPM3-220ENST00000509601 PAK6Q9NQU5 681 aaPredicted RBP21.5■■□□□ 1.03
TPM3-220ENST00000509601 HOXC10Q9NYD6 342 aa21.5■■□□□ 1.03
TPM3-220ENST00000509601 STAP2Q9UGK3 403 aa21.5■■□□□ 1.03
TPM3-220ENST00000509601 XRCC5P13010 732 aaKnown RBP21.49■■□□□ 1.03
TPM3-220ENST00000509601 GNAT2P19087 354 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms