RNA–Protein interactions for RNA: ENST00000508818.5

UBE2D3-227, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-227ENST00000508818 USP17L17D6RBQ6 530 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 USP17L19D6RCP7 530 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 USP17L20D6RJB6 530 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 SMARCA5O60264 1052 aaPredicted RBP12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 SLC34A2O95436 690 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 PLCD1P51178 756 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 USP17L24Q0WX57 530 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 LCORLQ8N3X6 602 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 U2AF1L4Q8WU68 220 aaKnown RBP12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 GPATCH3Q96I76 525 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 PAGR1Q9BTK6 254 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 ARMT1Q9H993 441 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 MORF4L1Q9UBU8 362 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 MYH1P12882 1939 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 MGAMO43451 1857 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 CDK5RAP2Q96SN8 1893 aa12.17□□□□□ -0.46
UBE2D3-227ENST00000508818 TCRBV5S4A2TA0A5A2 114 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 MBD4O95243 580 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 SGPL1O95470 568 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 CAPN2P17655 700 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 MAPK4P31152 587 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 SHMT1P34896 483 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 ADD2P35612 726 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 SDR42E1Q8WUS8 393 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 DEFB118Q96PH6 123 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 NUDT12Q9BQG2 462 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 HTATIP2Q9BUP3 242 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 DCP1AQ9NPI6 582 aaPredicted RBP12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 ATP8A2Q9NTI2 1148 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 ECHDC1Q9NTX5 307 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 SWAP70Q9UH65 585 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 FOCADQ5VW36 1801 aa12.16□□□□□ -0.46
UBE2D3-227ENST00000508818 GLRX3O76003 335 aaKnown RBP12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 FARP2O94887 1054 aaPredicted RBP12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 CYP2B6P20813 491 aa12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 CCNA1P78396 465 aa12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 UBE3CQ15386 1083 aa12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 WDR78Q5VTH9 848 aa12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 ACER1Q8TDN7 264 aa12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 KIAA1683Q9H0B3 1180 aa12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 RBPJLQ9UBG7 517 aa12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 SLC4A4Q9Y6R1 1079 aa12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 SIPA1L1O43166 1804 aa12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 LOC285556D6RIA3 1793 aa12.15□□□□□ -0.46
UBE2D3-227ENST00000508818 HTTP42858 3142 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 PRKAB2O43741 272 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 HMGCRP04035 888 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 CYP2D6P10635 497 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 ERVK-9P63128 1117 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 ERVK-24P63145 666 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 SEPT2Q15019 361 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 CATSPERGQ6ZRH7 1159 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 TRMT44Q8IYL2 757 aaKnown RBP12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 SOCS4Q8WXH5 440 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 SHISA4Q96DD7 197 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 C12orf42Q96LP6 360 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 DCTPP1Q9H773 170 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 TXNRD2Q9NNW7 524 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 HMX1Q9NP08 348 aaPredicted RBP12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 ZBTB47Q9UFB7 747 aaPredicted RBP12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 GJD2Q9UKL4 321 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 RABGAP1Q9Y3P9 1069 aa12.14□□□□□ -0.47
UBE2D3-227ENST00000508818 SPDYE4A6NLX3 237 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 H0YGN5 161 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 PEX10O60683 326 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 RGS2P41220 211 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 GABPAQ06546 454 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 Q3C1V9 767 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 SLFNL1Q499Z3 407 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 TMEM179Q6ZVK1 233 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 PLEKHH3Q7Z736 793 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 DYNLL2Q96FJ2 89 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.13□□□□□ -0.478e-9■■□□□ 13.6
UBE2D3-227ENST00000508818 RPAP3Q9H6T3 665 aaPredicted RBP12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 SH2D4AQ9H788 454 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 ARHGEF10LQ9HCE6 1279 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 NR2E3Q9Y5X4 410 aa12.13□□□□□ -0.47
UBE2D3-227ENST00000508818 RPTORQ8N122 1335 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 DOCK3Q8IZD9 2030 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 USP17L12C9JPN9 530 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 USP17L21D6R901 530 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 XRCC5P13010 732 aaKnown RBP12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 ZKSCAN1P17029 563 aaPredicted RBP12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 VCAM1P19320 739 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 LRRFIP1Q32MZ4 808 aaKnown RBP12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 C12orf60Q5U649 245 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 GPR142Q7Z601 462 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 SLC44A5Q8NCS7 719 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 CCDC17Q96LX7 622 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 TANGO6Q9C0B7 1094 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 PAK6Q9NQU5 681 aaPredicted RBP12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 HOXC10Q9NYD6 342 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 IVNS1ABPQ9Y6Y0 642 aa12.12□□□□□ -0.47
UBE2D3-227ENST00000508818 GUCY1A2P33402 732 aa12.11□□□□□ -0.47
UBE2D3-227ENST00000508818 CDK8P49336 464 aa12.11□□□□□ -0.47
UBE2D3-227ENST00000508818 ATP2B2Q01814 1243 aa12.11□□□□□ -0.47
UBE2D3-227ENST00000508818 EVX2Q03828 476 aa12.11□□□□□ -0.47
UBE2D3-227ENST00000508818 COG2Q14746 738 aa12.11□□□□□ -0.47
UBE2D3-227ENST00000508818 HABP4Q5JVS0 413 aaKnown RBP12.11□□□□□ -0.47
UBE2D3-227ENST00000508818 PORCNQ9H237 461 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms