RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 HAUS7Q99871 368 aa15.75■□□□□ 0.11
HMGCS1-205ENST00000508319 DCP1AQ9NPI6 582 aaPredicted RBP15.75■□□□□ 0.11
HMGCS1-205ENST00000508319 MCM9Q9NXL9 1143 aa15.75■□□□□ 0.11
HMGCS1-205ENST00000508319 FARP2O94887 1054 aaPredicted RBP15.74■□□□□ 0.11
HMGCS1-205ENST00000508319 SGPL1O95470 568 aa15.74■□□□□ 0.11
HMGCS1-205ENST00000508319 HMGCRP04035 888 aa15.74■□□□□ 0.11
HMGCS1-205ENST00000508319 GUCY1A2P33402 732 aa15.74■□□□□ 0.11
HMGCS1-205ENST00000508319 ADD2P35612 726 aa15.74■□□□□ 0.11
HMGCS1-205ENST00000508319 GPRC5AQ8NFJ5 357 aa15.74■□□□□ 0.11
HMGCS1-205ENST00000508319 ACER1Q8TDN7 264 aa15.74■□□□□ 0.11
HMGCS1-205ENST00000508319 GTF3C2Q8WUA4 911 aaPredicted RBP15.74■□□□□ 0.11
HMGCS1-205ENST00000508319 DEFB118Q96PH6 123 aa15.74■□□□□ 0.11
HMGCS1-205ENST00000508319 KIAA1683Q9H0B3 1180 aa15.74■□□□□ 0.11
HMGCS1-205ENST00000508319 RBPJLQ9UBG7 517 aa15.74■□□□□ 0.11
HMGCS1-205ENST00000508319 H0YGN5 161 aa15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 SMARCA5O60264 1052 aaPredicted RBP15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 CHGBP05060 677 aa15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 CYP2D6P10635 497 aa15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 VCAM1P19320 739 aa15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 USP14P54578 494 aa15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 ERVK-9P63128 1117 aa15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 ERVK-24P63145 666 aa15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 PAGR1Q9BTK6 254 aa15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 LRRCC1Q9C099 1032 aa15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 PORCNQ9H237 461 aa15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 ARMT1Q9H993 441 aa15.73■□□□□ 0.11
HMGCS1-205ENST00000508319 ALPK3Q96L96 1907 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 A0A0G2JMZ2 1700 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 MBD4O95243 580 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 TRIM32Q13049 653 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 SEPT2Q15019 361 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 Q3C1V9 767 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 SLC44A5Q8NCS7 719 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 SOCS4Q8WXH5 440 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 TRIB2Q92519 343 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 CRISPLD2Q9H0B8 497 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.72■□□□□ 0.111e-7■■□□□ 12.5
HMGCS1-205ENST00000508319 CABP5Q9NP86 173 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 RLFQ13129 1914 aa15.72■□□□□ 0.11
HMGCS1-205ENST00000508319 USP17L15C9J2P7 530 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 USP17L13C9JLJ4 530 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 USP17L11C9JVI0 530 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 USP17L18D6R9N7 530 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 USP17L22D6RA61 530 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 USP17L17D6RBQ6 530 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 USP17L19D6RCP7 530 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 USP17L20D6RJB6 530 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 PRKAB2O43741 272 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 CNMDO75829 334 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 MAPK4P31152 587 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 USP17L24Q0WX57 530 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 CATSPERGQ6ZRH7 1159 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 SZT2Q5T011 3432 aa15.71■□□□□ 0.11
HMGCS1-205ENST00000508319 SMIM22K7EJ46 135 aa15.7■□□□□ 0.1
HMGCS1-205ENST00000508319 CYP2B6P20813 491 aa15.7■□□□□ 0.1
HMGCS1-205ENST00000508319 UBE3CQ15386 1083 aa15.7■□□□□ 0.1
HMGCS1-205ENST00000508319 GPR142Q7Z601 462 aa15.7■□□□□ 0.1
HMGCS1-205ENST00000508319 USP6NLQ92738 828 aa15.7■□□□□ 0.1
HMGCS1-205ENST00000508319 NUDT12Q9BQG2 462 aa15.7■□□□□ 0.1
HMGCS1-205ENST00000508319 HTATIP2Q9BUP3 242 aa15.7■□□□□ 0.1
HMGCS1-205ENST00000508319 ATP8A2Q9NTI2 1148 aa15.7■□□□□ 0.1
HMGCS1-205ENST00000508319 COLQQ9Y215 455 aaPredicted RBP15.7■□□□□ 0.1
HMGCS1-205ENST00000508319 PARP14Q460N5 1801 aa15.7■□□□□ 0.1
HMGCS1-205ENST00000508319 RPTORQ8N122 1335 aa15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 A0A1W2PRG0 241 aa15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 MPHOSPH10O00566 681 aaKnown RBP15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 TFRCP02786 760 aaKnown RBP15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 XRCC5P13010 732 aaKnown RBP15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 CAPN2P17655 700 aa15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 MORN1Q5T089 497 aa15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 MAP3K21Q5TCX8 1036 aa15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 LBX2Q6XYB7 198 aa15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 DPF3Q92784 378 aa15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 DYNLL2Q96FJ2 89 aa15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 RPAP3Q9H6T3 665 aaPredicted RBP15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 SWAP70Q9UH65 585 aa15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 RABGAP1Q9Y3P9 1069 aa15.69■□□□□ 0.1
HMGCS1-205ENST00000508319 FRMPD3Q5JV73 1810 aa15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 GREB1LQ9C091 1923 aaPredicted RBP15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 LAMA3Q16787 3333 aa15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 CYP2D7A0A087X1C5 515 aa15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 SPDYE16A6NNV3 312 aaPredicted RBP15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 PRKAR2AP13861 404 aaKnown RBP15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 TMEM179Q6ZVK1 233 aa15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 PLEKHH3Q7Z736 793 aa15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 CLEC10AQ8IUN9 316 aa15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 DIS3LQ8TF46 1054 aaKnown RBP15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 PUS7LQ9H0K6 701 aaKnown RBP15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 HMX1Q9NP08 348 aaPredicted RBP15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 ECHDC1Q9NTX5 307 aa15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 ZNF236Q9UL36 1845 aa15.68■□□□□ 0.1
HMGCS1-205ENST00000508319 AKR1B1P15121 316 aa15.67■□□□□ 0.1
HMGCS1-205ENST00000508319 ZKSCAN1P17029 563 aaPredicted RBP15.67■□□□□ 0.1
HMGCS1-205ENST00000508319 KIAA1755Q5JYT7 1200 aa15.67■□□□□ 0.1
HMGCS1-205ENST00000508319 C12orf60Q5U649 245 aa15.67■□□□□ 0.1
HMGCS1-205ENST00000508319 TSHZ3Q63HK5 1081 aa15.67■□□□□ 0.1
HMGCS1-205ENST00000508319 CCAR1Q8IX12 1150 aaKnown RBP15.67■□□□□ 0.1
HMGCS1-205ENST00000508319 APBA2Q99767 749 aa15.67■□□□□ 0.1
HMGCS1-205ENST00000508319 DCTPP1Q9H773 170 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms