RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 ECHDC1Q9NTX5 307 aa17.39■□□□□ 0.37
HMGCS1-203ENST00000507004 RABGAP1Q9Y3P9 1069 aa17.39■□□□□ 0.37
HMGCS1-203ENST00000507004 TNRC18O15417 2968 aaPredicted RBP17.38■□□□□ 0.37
HMGCS1-203ENST00000507004 ELNP15502 786 aa17.38■□□□□ 0.37
HMGCS1-203ENST00000507004 ERVK-9P63128 1117 aa17.38■□□□□ 0.37
HMGCS1-203ENST00000507004 ERVK-24P63145 666 aa17.38■□□□□ 0.37
HMGCS1-203ENST00000507004 LBX2Q6XYB7 198 aa17.38■□□□□ 0.37
HMGCS1-203ENST00000507004 TMEM179Q6ZVK1 233 aa17.38■□□□□ 0.37
HMGCS1-203ENST00000507004 LCORLQ8N3X6 602 aa17.38■□□□□ 0.37
HMGCS1-203ENST00000507004 SHISA4Q96DD7 197 aa17.38■□□□□ 0.37
HMGCS1-203ENST00000507004 UNC93B1Q9H1C4 597 aa17.38■□□□□ 0.37
HMGCS1-203ENST00000507004 PAK6Q9NQU5 681 aaPredicted RBP17.38■□□□□ 0.37
HMGCS1-203ENST00000507004 GJD2Q9UKL4 321 aa17.38■□□□□ 0.37
HMGCS1-203ENST00000507004 DOCK3Q8IZD9 2030 aa17.37■□□□□ 0.37
HMGCS1-203ENST00000507004 C20orf194Q5TEA3 1177 aa17.37■□□□□ 0.37
HMGCS1-203ENST00000507004 CATSPERGQ6ZRH7 1159 aa17.37■□□□□ 0.37
HMGCS1-203ENST00000507004 ANKLE1Q8NAG6 615 aa17.37■□□□□ 0.37
HMGCS1-203ENST00000507004 CWC22Q9HCG8 908 aaKnown RBP17.37■□□□□ 0.37
HMGCS1-203ENST00000507004 RBPJLQ9UBG7 517 aa17.37■□□□□ 0.37
HMGCS1-203ENST00000507004 NAV1Q8NEY1 1877 aa17.37■□□□□ 0.37
HMGCS1-203ENST00000507004 DDX60LQ5H9U9 1706 aaKnown RBP17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 FARP2O94887 1054 aaPredicted RBP17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 MBD4O95243 580 aa17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 ZFYP08048 801 aaPredicted RBP17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 RGS2P41220 211 aa17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 UBE2Q1Q7Z7E8 422 aa17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 SDR42E1Q8WUS8 393 aa17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 LPAR1Q92633 364 aa17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 BCL11AQ9H165 835 aa17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 ARMT1Q9H993 441 aa17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 HMX1Q9NP08 348 aaPredicted RBP17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 PCDH10Q9P2E7 1040 aa17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 NR2E3Q9Y5X4 410 aa17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 RPTORQ8N122 1335 aa17.36■□□□□ 0.37
HMGCS1-203ENST00000507004 MPHOSPH10O00566 681 aaKnown RBP17.35■□□□□ 0.37
HMGCS1-203ENST00000507004 TFRCP02786 760 aaKnown RBP17.35■□□□□ 0.37
HMGCS1-203ENST00000507004 VCAM1P19320 739 aa17.35■□□□□ 0.37
HMGCS1-203ENST00000507004 PLEKHH3Q7Z736 793 aa17.35■□□□□ 0.37
HMGCS1-203ENST00000507004 EDC3Q96F86 508 aaKnown RBP17.35■□□□□ 0.37
HMGCS1-203ENST00000507004 DEFB118Q96PH6 123 aa17.35■□□□□ 0.37
HMGCS1-203ENST00000507004 CRISPLD2Q9H0B8 497 aa17.35■□□□□ 0.37
HMGCS1-203ENST00000507004 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.35■□□□□ 0.379e-6■□□□□ 8.2
HMGCS1-203ENST00000507004 ARHGEF10LQ9HCE6 1279 aa17.35■□□□□ 0.37
HMGCS1-203ENST00000507004 HOXC10Q9NYD6 342 aa17.35■□□□□ 0.37
HMGCS1-203ENST00000507004 SEPT2Q15019 361 aa17.34■□□□□ 0.37
HMGCS1-203ENST00000507004 ZYXQ15942 572 aaKnown RBP17.34■□□□□ 0.37
HMGCS1-203ENST00000507004 SHROOM1Q2M3G4 852 aaPredicted RBP17.34■□□□□ 0.37
HMGCS1-203ENST00000507004 C12orf60Q5U649 245 aa17.34■□□□□ 0.37
HMGCS1-203ENST00000507004 GIMAP6Q6P9H5 292 aa17.34■□□□□ 0.37
HMGCS1-203ENST00000507004 DPF3Q92784 378 aa17.34■□□□□ 0.37
HMGCS1-203ENST00000507004 PAGR1Q9BTK6 254 aa17.34■□□□□ 0.37
HMGCS1-203ENST00000507004 TXNRD2Q9NNW7 524 aa17.34■□□□□ 0.37
HMGCS1-203ENST00000507004 ARPP21Q9UBL0 812 aaPredicted RBP17.34■□□□□ 0.37
HMGCS1-203ENST00000507004 TTC41PQ6P2S7 1318 aa17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 ERC2O15083 957 aa17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 ZKSCAN1P17029 563 aaPredicted RBP17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 GUCY1A2P33402 732 aa17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 COG2Q14746 738 aa17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 GPR142Q7Z601 462 aa17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 MB21D1Q8N884 522 aa17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 KBTBD3Q8NAB2 608 aa17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 ACER1Q8TDN7 264 aa17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 APBA2Q99767 749 aa17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 SLC4A4Q9Y6R1 1079 aa17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 IVNS1ABPQ9Y6Y0 642 aa17.33■□□□□ 0.36
HMGCS1-203ENST00000507004 GNAT2P19087 354 aa17.32■□□□□ 0.36
HMGCS1-203ENST00000507004 CYP2B6P20813 491 aa17.32■□□□□ 0.36
HMGCS1-203ENST00000507004 HABP4Q5JVS0 413 aaKnown RBP17.32■□□□□ 0.36
HMGCS1-203ENST00000507004 C16orf86Q6ZW13 317 aa17.32■□□□□ 0.36
HMGCS1-203ENST00000507004 APPBP2Q92624 585 aa17.32■□□□□ 0.36
HMGCS1-203ENST00000507004 RPAP3Q9H6T3 665 aaPredicted RBP17.32■□□□□ 0.36
HMGCS1-203ENST00000507004 ZNF287Q9HBT7 754 aa17.32■□□□□ 0.36
HMGCS1-203ENST00000507004 ZBTB47Q9UFB7 747 aaPredicted RBP17.32■□□□□ 0.36
HMGCS1-203ENST00000507004 CENPFP49454 3210 aa17.32■□□□□ 0.36
HMGCS1-203ENST00000507004 MYH7P12883 1935 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 SLC15A5A6NIM6 579 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 USP17L12C9JPN9 530 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 USP17L21D6R901 530 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 SMARCA5O60264 1052 aaPredicted RBP17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 ICA1Q05084 483 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 MAP2K5Q13163 448 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 Q3C1V9 767 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 MORN1Q5T089 497 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 MAP3K21Q5TCX8 1036 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 NECAB2Q7Z6G3 386 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 USP6NLQ92738 828 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 KANSL2Q9H9L4 492 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 TMX2Q9Y320 296 aa17.31■□□□□ 0.36
HMGCS1-203ENST00000507004 SPDYE16A6NNV3 312 aaPredicted RBP17.3■□□□□ 0.36
HMGCS1-203ENST00000507004 PRKAB2O43741 272 aa17.3■□□□□ 0.36
HMGCS1-203ENST00000507004 STRNO43815 780 aa17.3■□□□□ 0.36
HMGCS1-203ENST00000507004 CDK8P49336 464 aa17.3■□□□□ 0.36
HMGCS1-203ENST00000507004 SBK1Q52WX2 424 aa17.3■□□□□ 0.36
HMGCS1-203ENST00000507004 SHCBP1Q8NEM2 672 aa17.3■□□□□ 0.36
HMGCS1-203ENST00000507004 TRIB2Q92519 343 aa17.3■□□□□ 0.36
HMGCS1-203ENST00000507004 PORCNQ9H237 461 aa17.3■□□□□ 0.36
HMGCS1-203ENST00000507004 H0YGN5 161 aa17.29■□□□□ 0.36
HMGCS1-203ENST00000507004 WDR46O15213 610 aaKnown RBP17.29■□□□□ 0.36
HMGCS1-203ENST00000507004 RNF113AO15541 343 aaKnown RBP17.29■□□□□ 0.36
HMGCS1-203ENST00000507004 HOXC6P09630 235 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms