RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 ANGEL1Q9UNK9 670 aaKnown RBP8.47□□□□□ -1.05
NUP54-204ENST00000506098 CLEC11AQ9Y240 323 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 RBBP6Q7Z6E9 1792 aaKnown RBP8.46□□□□□ -1.05
NUP54-204ENST00000506098 ERICH2A1L162 156 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 UNCXA6NJT0 531 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 KIF3CO14782 793 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 IFIT3O14879 490 aaKnown RBP8.46□□□□□ -1.06
NUP54-204ENST00000506098 ITGBL1O95965 494 aaPredicted RBP8.46□□□□□ -1.06
NUP54-204ENST00000506098 NF2P35240 595 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 RCAN1P53805 252 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 JAG1P78504 1218 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 WTAPQ15007 396 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 ABCB5Q2M3G0 1257 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 TMEM67Q5HYA8 995 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 NOL9Q5SY16 702 aaKnown RBP8.46□□□□□ -1.06
NUP54-204ENST00000506098 PRAMEF18Q5VWM3 479 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 MAP1SQ66K74 1059 aaPredicted RBP8.46□□□□□ -1.06
NUP54-204ENST00000506098 CHADLQ6NUI6 762 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 ENAHQ8N8S7 591 aaPredicted RBP8.46□□□□□ -1.06
NUP54-204ENST00000506098 ZNF526Q8TF50 670 aaPredicted RBP8.46□□□□□ -1.06
NUP54-204ENST00000506098 MKL1Q969V6 931 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 ZNF274Q96GC6 653 aaPredicted RBP8.46□□□□□ -1.06
NUP54-204ENST00000506098 TCEANC2Q96MN5 208 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 ZKSCAN3Q9BRR0 538 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 UBAC1Q9BSL1 405 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 LRRC2Q9BYS8 371 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 GPBP1L1Q9HC44 474 aaPredicted RBP8.46□□□□□ -1.06
NUP54-204ENST00000506098 CABP5Q9NP86 173 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 MTMR4Q9NYA4 1195 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 NYAP2Q9P242 653 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 TNKSO95271 1327 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 NID2Q14112 1375 aa8.46□□□□□ -1.06
NUP54-204ENST00000506098 PPP1R12BO60237 982 aaPredicted RBP8.45□□□□□ -1.06
NUP54-204ENST00000506098 NMT2O60551 498 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 GDF11O95390 407 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 ASNSP08243 561 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 ANP32AP39687 249 aaKnown RBP8.45□□□□□ -1.06
NUP54-204ENST00000506098 DLK2Q6UY11 383 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 SIAH1Q8IUQ4 282 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.45□□□□□ -1.06
NUP54-204ENST00000506098 BRF1Q92994 677 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 CEP95Q96GE4 821 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 ZSCAN31Q96LW9 406 aaPredicted RBP8.45□□□□□ -1.06
NUP54-204ENST00000506098 MAP3K14Q99558 947 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 TBC1D2Q9BYX2 928 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 KANSL2Q9H9L4 492 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 GPHNQ9NQX3 736 aaPredicted RBP8.45□□□□□ -1.06
NUP54-204ENST00000506098 BRPF3Q9ULD4 1205 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 ZBTB21Q9ULJ3 1066 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 SYNPO2Q9UMS6 1093 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 LIMCH1Q9UPQ0 1083 aa8.45□□□□□ -1.06
NUP54-204ENST00000506098 DOCK3Q8IZD9 2030 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 K7ELQ4 463 aaPredicted RBP8.44□□□□□ -1.06
NUP54-204ENST00000506098 MPHOSPH10O00566 681 aaKnown RBP8.44□□□□□ -1.06
NUP54-204ENST00000506098 TTLL1O95922 423 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 GH2P01242 217 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 TOP1P11387 765 aaKnown RBP8.44□□□□□ -1.06
NUP54-204ENST00000506098 PDIA3P30101 505 aaKnown RBP8.44□□□□□ -1.06
NUP54-204ENST00000506098 INPP5BP32019 993 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 IREB2P48200 963 aaKnown RBP8.44□□□□□ -1.06
NUP54-204ENST00000506098 FKBP1BP68106 108 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 MAP3K9P80192 1104 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 APOBRQ0VD83 1088 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 SEPT2Q15019 361 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 PPP2R5BQ15173 497 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 SHROOM1Q2M3G4 852 aaPredicted RBP8.44□□□□□ -1.06
NUP54-204ENST00000506098 LDLRAD1Q5T700 205 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 IFIT1BQ5T764 474 aaKnown RBP8.44□□□□□ -1.06
NUP54-204ENST00000506098 APOA5Q6Q788 366 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 SCYL3Q8IZE3 742 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 TMX3Q96JJ7 454 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 WRNIP1Q96S55 665 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 TMEM47Q9BQJ4 181 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 SENP2Q9HC62 589 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 SH2B1Q9NRF2 756 aaPredicted RBP8.44□□□□□ -1.06
NUP54-204ENST00000506098 TPCN1Q9ULQ1 816 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 MGAMO43451 1857 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 MYH7BA7E2Y1 1941 aa8.44□□□□□ -1.06
NUP54-204ENST00000506098 A0A0G2JMZ2 1700 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 KLF18A0A0U1RQI7 1052 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 CCDC69A6NI79 296 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 TRAF5O00463 557 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 PFKFB2O60825 505 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 DDAH1O94760 285 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 LARGE1O95461 756 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 ATXN8OSP0DMR3 200 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 CALM1P0DP23 149 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 CALM2P0DP24 149 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 CALM3P0DP25 149 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 EEF2P13639 858 aaKnown RBP8.43□□□□□ -1.06
NUP54-204ENST00000506098 TROAPQ12815 778 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 CUL4AQ13619 759 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 BECN1Q14457 450 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 ME3Q16798 604 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.43□□□□□ -1.06
NUP54-204ENST00000506098 ARMC9Q7Z3E5 817 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 HSCBQ8IWL3 235 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 ANKRD13AQ8IZ07 590 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 ZNF654Q8IZM8 581 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 RBM46Q8TBY0 533 aaKnown RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms