RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 AMOTL1Q8IY63 956 aa25.52■■□□□ 1.68
SQSTM1-210ENST00000506042 RBPJLQ9UBG7 517 aa25.52■■□□□ 1.68
SQSTM1-210ENST00000506042 ZYXQ15942 572 aaKnown RBP25.51■■□□□ 1.67
SQSTM1-210ENST00000506042 GPR153Q6NV75 609 aa25.51■■□□□ 1.67
SQSTM1-210ENST00000506042 CLASRPQ8N2M8 674 aaKnown RBP25.51■■□□□ 1.67
SQSTM1-210ENST00000506042 DIS3LQ8TF46 1054 aaKnown RBP25.51■■□□□ 1.67
SQSTM1-210ENST00000506042 EAF2Q96CJ1 260 aaPredicted RBP25.51■■□□□ 1.67
SQSTM1-210ENST00000506042 EDC3Q96F86 508 aaKnown RBP25.51■■□□□ 1.67
SQSTM1-210ENST00000506042 EMILIN3Q9NT22 766 aa25.51■■□□□ 1.67
SQSTM1-210ENST00000506042 DDX60LQ5H9U9 1706 aaKnown RBP25.51■■□□□ 1.67
SQSTM1-210ENST00000506042 MAGEB6P1A0A0J9YX57 407 aa25.5■■□□□ 1.67
SQSTM1-210ENST00000506042 MAP2K5Q13163 448 aa25.5■■□□□ 1.67
SQSTM1-210ENST00000506042 TXNRD2Q9NNW7 524 aa25.5■■□□□ 1.67
SQSTM1-210ENST00000506042 SLC5A4Q9NY91 659 aa25.5■■□□□ 1.67
SQSTM1-210ENST00000506042 SLC15A5A6NIM6 579 aa25.49■■□□□ 1.67
SQSTM1-210ENST00000506042 DDRGK1Q96HY6 314 aa25.49■■□□□ 1.67
SQSTM1-210ENST00000506042 SH2D4AQ9H788 454 aa25.49■■□□□ 1.67
SQSTM1-210ENST00000506042 MYO5AQ9Y4I1 1855 aaKnown RBP25.49■■□□□ 1.67
SQSTM1-210ENST00000506042 ATP2B2Q01814 1243 aa25.48■■□□□ 1.67
SQSTM1-210ENST00000506042 CACNB2Q08289 660 aaPredicted RBP25.48■■□□□ 1.67
SQSTM1-210ENST00000506042 MORN1Q5T089 497 aa25.48■■□□□ 1.67
SQSTM1-210ENST00000506042 TLR7Q9NYK1 1049 aaKnown RBP25.48■■□□□ 1.67
SQSTM1-210ENST00000506042 PLXNB2O15031 1838 aa25.48■■□□□ 1.67
SQSTM1-210ENST00000506042 MPHOSPH10O00566 681 aaKnown RBP25.47■■□□□ 1.67
SQSTM1-210ENST00000506042 IFIT2P09913 472 aaKnown RBP25.47■■□□□ 1.67
SQSTM1-210ENST00000506042 TRIM32Q13049 653 aa25.47■■□□□ 1.67
SQSTM1-210ENST00000506042 CEP85Q6P2H3 762 aa25.47■■□□□ 1.67
SQSTM1-210ENST00000506042 LBX2Q6XYB7 198 aa25.47■■□□□ 1.67
SQSTM1-210ENST00000506042 CATSPERGQ6ZRH7 1159 aa25.47■■□□□ 1.67
SQSTM1-210ENST00000506042 GDF15Q99988 308 aa25.47■■□□□ 1.67
SQSTM1-210ENST00000506042 PORCNQ9H237 461 aa25.47■■□□□ 1.67
SQSTM1-210ENST00000506042 HOXC10Q9NYD6 342 aa25.47■■□□□ 1.67
SQSTM1-210ENST00000506042 ZMYND8Q9ULU4 1186 aaPredicted RBP25.47■■□□□ 1.67
SQSTM1-210ENST00000506042 VCAM1P19320 739 aa25.46■■□□□ 1.67
SQSTM1-210ENST00000506042 SLC9C2Q5TAH2 1124 aa25.46■■□□□ 1.67
SQSTM1-210ENST00000506042 USP6NLQ92738 828 aa25.46■■□□□ 1.67
SQSTM1-210ENST00000506042 KIF1BPQ96EK5 621 aa25.46■■□□□ 1.67
SQSTM1-210ENST00000506042 UBE2OQ9C0C9 1292 aaKnown RBP25.46■■□□□ 1.67
SQSTM1-210ENST00000506042 MCM9Q9NXL9 1143 aa25.46■■□□□ 1.67
SQSTM1-210ENST00000506042 PRKAG2Q9UGJ0 569 aa25.46■■□□□ 1.67
SQSTM1-210ENST00000506042 EXOC6BQ9Y2D4 811 aa25.46■■□□□ 1.67
SQSTM1-210ENST00000506042 JAG1P78504 1218 aa25.45■■□□□ 1.66
SQSTM1-210ENST00000506042 TDHQ8IZJ6 230 aa25.45■■□□□ 1.66
SQSTM1-210ENST00000506042 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.45■■□□□ 1.66
SQSTM1-210ENST00000506042 SWAP70Q9UH65 585 aa25.45■■□□□ 1.66
SQSTM1-210ENST00000506042 STRNO43815 780 aa25.44■■□□□ 1.66
SQSTM1-210ENST00000506042 PTPREP23469 700 aa25.44■■□□□ 1.66
SQSTM1-210ENST00000506042 CNGA1P29973 690 aa25.44■■□□□ 1.66
SQSTM1-210ENST00000506042 Q3C1V9 767 aa25.44■■□□□ 1.66
SQSTM1-210ENST00000506042 MB21D1Q8N884 522 aa25.44■■□□□ 1.66
SQSTM1-210ENST00000506042 SLC17A8Q8NDX2 589 aa25.44■■□□□ 1.66
SQSTM1-210ENST00000506042 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.44■■□□□ 1.66
SQSTM1-210ENST00000506042 LBHD1Q9BQE6 289 aaPredicted RBP25.44■■□□□ 1.66
SQSTM1-210ENST00000506042 RPAP3Q9H6T3 665 aaPredicted RBP25.44■■□□□ 1.66
SQSTM1-210ENST00000506042 ARHGEF10LQ9HCE6 1279 aa25.44■■□□□ 1.66
SQSTM1-210ENST00000506042 NAV1Q8NEY1 1877 aa25.44■■□□□ 1.66
SQSTM1-210ENST00000506042 ALPK3Q96L96 1907 aa25.43■■□□□ 1.66
SQSTM1-210ENST00000506042 COG2Q14746 738 aa25.43■■□□□ 1.66
SQSTM1-210ENST00000506042 DPP9Q86TI2 863 aa25.43■■□□□ 1.66
SQSTM1-210ENST00000506042 TANGO6Q9C0B7 1094 aa25.43■■□□□ 1.66
SQSTM1-210ENST00000506042 LRIT3Q3SXY7 679 aa25.42■■□□□ 1.66
SQSTM1-210ENST00000506042 TMEM179Q6ZVK1 233 aa25.42■■□□□ 1.66
SQSTM1-210ENST00000506042 RPAP2Q8IXW5 612 aaPredicted RBP25.42■■□□□ 1.66
SQSTM1-210ENST00000506042 RHPN1Q8TCX5 695 aa25.42■■□□□ 1.66
SQSTM1-210ENST00000506042 LPAR1Q92633 364 aa25.42■■□□□ 1.66
SQSTM1-210ENST00000506042 HOXC6P09630 235 aa25.41■■□□□ 1.66
SQSTM1-210ENST00000506042 SYN1P17600 705 aa25.41■■□□□ 1.66
SQSTM1-210ENST00000506042 MAGEA10P43363 369 aaPredicted RBP25.41■■□□□ 1.66
SQSTM1-210ENST00000506042 DNAJC2Q99543 621 aaKnown RBP25.41■■□□□ 1.66
SQSTM1-210ENST00000506042 RIOK1Q9BRS2 568 aaKnown RBP25.41■■□□□ 1.66
SQSTM1-210ENST00000506042 ANTXR1Q9H6X2 564 aa25.41■■□□□ 1.66
SQSTM1-210ENST00000506042 RAB11FIP3O75154 756 aa25.4■■□□□ 1.66
SQSTM1-210ENST00000506042 PDE6AP16499 860 aa25.4■■□□□ 1.66
SQSTM1-210ENST00000506042 CCND3P30281 292 aaPredicted RBP25.4■■□□□ 1.66
SQSTM1-210ENST00000506042 CCL14Q16627 93 aa25.4■■□□□ 1.66
SQSTM1-210ENST00000506042 SHROOM1Q2M3G4 852 aaPredicted RBP25.4■■□□□ 1.66
SQSTM1-210ENST00000506042 ARRDC4Q8NCT1 418 aa25.4■■□□□ 1.66
SQSTM1-210ENST00000506042 IL1RAPL2Q9NP60 686 aa25.4■■□□□ 1.66
SQSTM1-210ENST00000506042 DDX20Q9UHI6 824 aaKnown RBP25.4■■□□□ 1.66
SQSTM1-210ENST00000506042 DDX19BQ9UMR2 479 aa25.4■■□□□ 1.66
SQSTM1-210ENST00000506042 COL6A1P12109 1028 aa25.39■■□□□ 1.66
SQSTM1-210ENST00000506042 RLBP1P12271 317 aa25.39■■□□□ 1.66
SQSTM1-210ENST00000506042 SHMT1P34896 483 aa25.39■■□□□ 1.66
SQSTM1-210ENST00000506042 GRB14Q14449 540 aa25.39■■□□□ 1.66
SQSTM1-210ENST00000506042 SHCBP1Q8NEM2 672 aa25.39■■□□□ 1.66
SQSTM1-210ENST00000506042 SPDYE16A6NNV3 312 aaPredicted RBP25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 GOLIM4O00461 696 aa25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 PEX10O60683 326 aa25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 PLCD1P51178 756 aa25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 SEPT2Q15019 361 aa25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 LHX8Q68G74 356 aa25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 ZSCAN25Q6NSZ9 544 aa25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 ACER1Q8TDN7 264 aa25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 CCDC17Q96LX7 622 aa25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 MROH8Q9H579 483 aa25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 ATP8A2Q9NTI2 1148 aa25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 NDUFB9Q9Y6M9 179 aa25.38■■□□□ 1.65
SQSTM1-210ENST00000506042 PFASO15067 1338 aa25.37■■□□□ 1.65
SQSTM1-210ENST00000506042 ZNF532Q9HCE3 1301 aa25.37■■□□□ 1.65
SQSTM1-210ENST00000506042 KBTBD13C9JR72 458 aa25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms