RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 TMEM57Q8N5G2 664 aa17.98■□□□□ 0.47
TRAF4-212ENST00000498540 MIGA1Q8NAN2 632 aa17.98■□□□□ 0.47
TRAF4-212ENST00000498540 SSH3Q8TE77 659 aa17.98■□□□□ 0.47
TRAF4-212ENST00000498540 ZNF512BQ96KM6 892 aaPredicted RBP17.98■□□□□ 0.47
TRAF4-212ENST00000498540 DBNLQ9UJU6 430 aaKnown RBP17.98■□□□□ 0.47
TRAF4-212ENST00000498540 RABGAP1Q9Y3P9 1069 aa17.98■□□□□ 0.47
TRAF4-212ENST00000498540 USP17L15C9J2P7 530 aa17.97■□□□□ 0.47
TRAF4-212ENST00000498540 USP17L13C9JLJ4 530 aa17.97■□□□□ 0.47
TRAF4-212ENST00000498540 USP17L11C9JVI0 530 aa17.97■□□□□ 0.47
TRAF4-212ENST00000498540 USP17L18D6R9N7 530 aa17.97■□□□□ 0.47
TRAF4-212ENST00000498540 USP17L22D6RA61 530 aa17.97■□□□□ 0.47
TRAF4-212ENST00000498540 USP17L17D6RBQ6 530 aa17.97■□□□□ 0.47
TRAF4-212ENST00000498540 USP17L19D6RCP7 530 aa17.97■□□□□ 0.47
TRAF4-212ENST00000498540 USP17L20D6RJB6 530 aa17.97■□□□□ 0.47
TRAF4-212ENST00000498540 USP17L24Q0WX57 530 aa17.97■□□□□ 0.47
TRAF4-212ENST00000498540 EDC3Q96F86 508 aaKnown RBP17.97■□□□□ 0.47
TRAF4-212ENST00000498540 LTBP2Q14767 1821 aa17.96■□□□□ 0.47
TRAF4-212ENST00000498540 SURF6O75683 361 aaKnown RBP17.96■□□□□ 0.47
TRAF4-212ENST00000498540 IDH1O75874 414 aaKnown RBP17.96■□□□□ 0.47
TRAF4-212ENST00000498540 VCAM1P19320 739 aa17.96■□□□□ 0.47
TRAF4-212ENST00000498540 CCNA1P78396 465 aa17.96■□□□□ 0.47
TRAF4-212ENST00000498540 RAB3GAP1Q15042 981 aa17.96■□□□□ 0.47
TRAF4-212ENST00000498540 WDR78Q5VTH9 848 aa17.96■□□□□ 0.47
TRAF4-212ENST00000498540 CATSPERGQ6ZRH7 1159 aa17.96■□□□□ 0.47
TRAF4-212ENST00000498540 ACER1Q8TDN7 264 aa17.96■□□□□ 0.47
TRAF4-212ENST00000498540 C1orf115Q9H7X2 142 aa17.96■□□□□ 0.47
TRAF4-212ENST00000498540 BTBD7Q9P203 1132 aa17.96■□□□□ 0.47
TRAF4-212ENST00000498540 UNC80Q8N2C7 3258 aa17.96■□□□□ 0.47
TRAF4-212ENST00000498540 NAV1Q8NEY1 1877 aa17.95■□□□□ 0.46
TRAF4-212ENST00000498540 SLC15A5A6NIM6 579 aa17.95■□□□□ 0.46
TRAF4-212ENST00000498540 IGSF3O75054 1194 aa17.95■□□□□ 0.46
TRAF4-212ENST00000498540 PTPREP23469 700 aa17.95■□□□□ 0.46
TRAF4-212ENST00000498540 USP5P45974 858 aa17.95■□□□□ 0.46
TRAF4-212ENST00000498540 ATP8B2P98198 1209 aa17.95■□□□□ 0.46
TRAF4-212ENST00000498540 MFSD14CQ5VZR4 134 aa17.95■□□□□ 0.46
TRAF4-212ENST00000498540 SENP6Q9GZR1 1112 aaPredicted RBP17.95■□□□□ 0.46
TRAF4-212ENST00000498540 KIAA1683Q9H0B3 1180 aa17.95■□□□□ 0.46
TRAF4-212ENST00000498540 CCDC8Q9H0W5 538 aaPredicted RBP17.95■□□□□ 0.46
TRAF4-212ENST00000498540 EHD4Q9H223 541 aa17.95■□□□□ 0.46
TRAF4-212ENST00000498540 SERPINB13Q9UIV8 391 aa17.95■□□□□ 0.46
TRAF4-212ENST00000498540 LAMA2P24043 3122 aaKnown RBP17.95■□□□□ 0.46
TRAF4-212ENST00000498540 GLRX3O76003 335 aaKnown RBP17.94■□□□□ 0.46
TRAF4-212ENST00000498540 USP14P54578 494 aa17.94■□□□□ 0.46
TRAF4-212ENST00000498540 GRB14Q14449 540 aa17.94■□□□□ 0.46
TRAF4-212ENST00000498540 MAGEB6Q8N7X4 407 aa17.94■□□□□ 0.46
TRAF4-212ENST00000498540 NPLOC4Q8TAT6 608 aa17.94■□□□□ 0.46
TRAF4-212ENST00000498540 DDX20Q9UHI6 824 aaKnown RBP17.94■□□□□ 0.46
TRAF4-212ENST00000498540 ZNF236Q9UL36 1845 aa17.93■□□□□ 0.46
TRAF4-212ENST00000498540 SPDYE16A6NNV3 312 aaPredicted RBP17.93■□□□□ 0.46
TRAF4-212ENST00000498540 HOXC6P09630 235 aa17.93■□□□□ 0.46
TRAF4-212ENST00000498540 CNGA1P29973 690 aa17.93■□□□□ 0.46
TRAF4-212ENST00000498540 CYP2C19P33261 490 aa17.93■□□□□ 0.46
TRAF4-212ENST00000498540 SHMT1P34896 483 aa17.93■□□□□ 0.46
TRAF4-212ENST00000498540 ATN1P54259 1190 aaPredicted RBP17.93■□□□□ 0.46
TRAF4-212ENST00000498540 ABCB5Q2M3G0 1257 aa17.93■□□□□ 0.46
TRAF4-212ENST00000498540 CERKLQ49MI3 558 aaPredicted RBP17.93■□□□□ 0.46
TRAF4-212ENST00000498540 LBX2Q6XYB7 198 aa17.93■□□□□ 0.46
TRAF4-212ENST00000498540 TRPV1Q8NER1 839 aa17.93■□□□□ 0.46
TRAF4-212ENST00000498540 EAF2Q96CJ1 260 aaPredicted RBP17.93■□□□□ 0.46
TRAF4-212ENST00000498540 RPAP3Q9H6T3 665 aaPredicted RBP17.93■□□□□ 0.46
TRAF4-212ENST00000498540 ANTXR1Q9H6X2 564 aa17.93■□□□□ 0.46
TRAF4-212ENST00000498540 RLFQ13129 1914 aa17.93■□□□□ 0.46
TRAF4-212ENST00000498540 A0A0G2JMZ2 1700 aa17.92■□□□□ 0.46
TRAF4-212ENST00000498540 GUCY1A2P33402 732 aa17.92■□□□□ 0.46
TRAF4-212ENST00000498540 ATP2B2Q01814 1243 aa17.92■□□□□ 0.46
TRAF4-212ENST00000498540 CERS3Q8IU89 383 aa17.92■□□□□ 0.46
TRAF4-212ENST00000498540 LPAR1Q92633 364 aa17.92■□□□□ 0.46
TRAF4-212ENST00000498540 GUCD1Q96NT3 240 aa17.92■□□□□ 0.46
TRAF4-212ENST00000498540 NOP58Q9Y2X3 529 aaKnown RBP17.92■□□□□ 0.46
TRAF4-212ENST00000498540 IVNS1ABPQ9Y6Y0 642 aa17.92■□□□□ 0.46
TRAF4-212ENST00000498540 POTEB2H3BUK9 544 aa17.91■□□□□ 0.46
TRAF4-212ENST00000498540 MSCO60682 206 aa17.91■□□□□ 0.46
TRAF4-212ENST00000498540 IGHA2P01877 340 aa17.91■□□□□ 0.46
TRAF4-212ENST00000498540 CYBAP13498 195 aa17.91■□□□□ 0.46
TRAF4-212ENST00000498540 PLCD1P51178 756 aa17.91■□□□□ 0.46
TRAF4-212ENST00000498540 ZKSCAN2Q63HK3 967 aa17.91■□□□□ 0.46
TRAF4-212ENST00000498540 TTC6Q86TZ1 520 aa17.91■□□□□ 0.46
TRAF4-212ENST00000498540 LBHD1Q9BQE6 289 aaPredicted RBP17.91■□□□□ 0.46
TRAF4-212ENST00000498540 DNM1LO00429 736 aa17.9■□□□□ 0.46
TRAF4-212ENST00000498540 RTP1P59025 263 aa17.9■□□□□ 0.46
TRAF4-212ENST00000498540 EVX2Q03828 476 aa17.9■□□□□ 0.46
TRAF4-212ENST00000498540 FAM109BQ6ICB4 259 aaPredicted RBP17.9■□□□□ 0.46
TRAF4-212ENST00000498540 FAM161BQ96MY7 647 aa17.9■□□□□ 0.46
TRAF4-212ENST00000498540 CABP5Q9NP86 173 aa17.9■□□□□ 0.46
TRAF4-212ENST00000498540 MAP3K12Q12852 859 aa17.89■□□□□ 0.45
TRAF4-212ENST00000498540 SEPT2Q15019 361 aa17.89■□□□□ 0.45
TRAF4-212ENST00000498540 GJC2Q5T442 439 aaPredicted RBP17.89■□□□□ 0.45
TRAF4-212ENST00000498540 RIOK1Q9BRS2 568 aaKnown RBP17.89■□□□□ 0.45
TRAF4-212ENST00000498540 COL25A1Q9BXS0 654 aaPredicted RBP17.89■□□□□ 0.45
TRAF4-212ENST00000498540 A0A1W2PRG0 241 aa17.88■□□□□ 0.45
TRAF4-212ENST00000498540 ADORA2AP29274 412 aa17.88■□□□□ 0.45
TRAF4-212ENST00000498540 GABPAQ06546 454 aa17.88■□□□□ 0.45
TRAF4-212ENST00000498540 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.88■□□□□ 0.455e-7■■■■■ 32.1
TRAF4-212ENST00000498540 MOV10L1Q9BXT6 1211 aaKnown RBP17.88■□□□□ 0.45
TRAF4-212ENST00000498540 ATP11BQ9Y2G3 1177 aa17.88■□□□□ 0.45
TRAF4-212ENST00000498540 MYH8P13535 1937 aa17.88■□□□□ 0.45
TRAF4-212ENST00000498540 PARP14Q460N5 1801 aa17.87■□□□□ 0.45
TRAF4-212ENST00000498540 ANO1Q5XXA6 986 aa17.87■□□□□ 0.45
TRAF4-212ENST00000498540 DPP9Q86TI2 863 aa17.87■□□□□ 0.45
TRAF4-212ENST00000498540 PRKAG2Q9UGJ0 569 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms