RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 DBNDD2Q9BQY9 259 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 YIPF2Q9BWQ6 316 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 RAD18Q9NS91 495 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 RRP7BPQ9NSQ0 103 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 KANK1Q14678 1352 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 AATKQ6ZMQ8 1374 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 RREB1Q92766 1687 aa6.04□□□□□ -1.44
USP54-217ENST00000498213 LAMC1P11047 1609 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 ADGRL2O95490 1459 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 TMEM238LA0A1B0GVL6 79 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 B3GALT4O96024 378 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 ITPKAP23677 461 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 MAPK8P45983 427 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 GRM2Q14416 872 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 PDE3AQ14432 1141 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 ZNF423Q2M1K9 1284 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 PRPF40BQ6NWY9 871 aaKnown RBP6.03□□□□□ -1.44
USP54-217ENST00000498213 KRT28Q7Z3Y7 464 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 CLEC10AQ8IUN9 316 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 SMG8Q8ND04 991 aaKnown RBP6.03□□□□□ -1.44
USP54-217ENST00000498213 TRAIPQ9BWF2 469 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 TMPRSS13Q9BYE2 586 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 KRTAP4-7Q9BYR0 210 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 ABCB6Q9NP58 842 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 STK32BQ9NY57 414 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 USP35Q9P2H5 1018 aa6.03□□□□□ -1.44
USP54-217ENST00000498213 GPN3Q9UHW5 284 aaPredicted RBP6.03□□□□□ -1.44
USP54-217ENST00000498213 ARHGEF5Q12774 1597 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 WNT11O96014 354 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 IGHA2P01877 340 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 MAP4P27816 1152 aaKnown RBP6.02□□□□□ -1.45
USP54-217ENST00000498213 FCGRTP55899 365 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 ATP2B2Q01814 1243 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 PTPN12Q05209 780 aaKnown RBP6.02□□□□□ -1.45
USP54-217ENST00000498213 AP3B2Q13367 1082 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 LCE1DQ5T752 114 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 PTF1AQ7RTS3 328 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 DTX1Q86Y01 620 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 GIMAP7Q8NHV1 300 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 SUGCTQ9HAC7 445 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 CASZ1Q86V15 1759 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 USP32Q8NFA0 1604 aa6.02□□□□□ -1.45
USP54-217ENST00000498213 PRR19A6NJB7 356 aa6.01□□□□□ -1.45
USP54-217ENST00000498213 TREHO43280 583 aa6.01□□□□□ -1.45
USP54-217ENST00000498213 TOMM70O94826 608 aa6.01□□□□□ -1.45
USP54-217ENST00000498213 ZNF157P51786 506 aaPredicted RBP6.01□□□□□ -1.45
USP54-217ENST00000498213 PPP2R3AQ06190 1150 aa6.01□□□□□ -1.45
USP54-217ENST00000498213 SLC15A2Q16348 729 aa6.01□□□□□ -1.45
USP54-217ENST00000498213 SGO2Q562F6 1265 aa6.01□□□□□ -1.45
USP54-217ENST00000498213 RPS26P11Q5JNZ5 115 aaPredicted RBP6.01□□□□□ -1.45
USP54-217ENST00000498213 AKAP4Q5JQC9 854 aa6.01□□□□□ -1.45
USP54-217ENST00000498213 FAM83CQ9BQN1 747 aa6.01□□□□□ -1.45
USP54-217ENST00000498213 AP4E1Q9UPM8 1137 aa6.01□□□□□ -1.45
USP54-217ENST00000498213 NALCNQ8IZF0 1738 aa6.01□□□□□ -1.45
USP54-217ENST00000498213 LRPPRCP42704 1394 aaKnown RBP6.01□□□□□ -1.45
USP54-217ENST00000498213 MAP3K5Q99683 1374 aa6.01□□□□□ -1.45
USP54-217ENST00000498213 ARID1BQ8NFD5 2236 aaPredicted RBP6.01□□□□□ -1.45
USP54-217ENST00000498213 PCNTO95613 3336 aa6□□□□□ -1.45
USP54-217ENST00000498213 PTPN23Q9H3S7 1636 aa6□□□□□ -1.45
USP54-217ENST00000498213 EIF2AK4Q9P2K8 1649 aaKnown RBP6□□□□□ -1.45
USP54-217ENST00000498213 XRN1Q8IZH2 1706 aaKnown RBP6□□□□□ -1.45
USP54-217ENST00000498213 DLGAP3O95886 979 aa6□□□□□ -1.45
USP54-217ENST00000498213 ADH5P11766 374 aa6□□□□□ -1.45
USP54-217ENST00000498213 XRCC5P13010 732 aaKnown RBP6□□□□□ -1.45
USP54-217ENST00000498213 PDIA4P13667 645 aaKnown RBP6□□□□□ -1.45
USP54-217ENST00000498213 DRD2P14416 443 aa6□□□□□ -1.45
USP54-217ENST00000498213 SOX4Q06945 474 aaPredicted RBP6□□□□□ -1.45
USP54-217ENST00000498213 NFKBIBQ15653 356 aa6□□□□□ -1.45
USP54-217ENST00000498213 ENOX2Q16206 610 aaKnown RBP6□□□□□ -1.45
USP54-217ENST00000498213 LARP7Q4G0J3 582 aaKnown RBP eCLIP6□□□□□ -1.45
USP54-217ENST00000498213 PAOXQ6QHF9 649 aa6□□□□□ -1.45
USP54-217ENST00000498213 PI16Q6UXB8 463 aa6□□□□□ -1.45
USP54-217ENST00000498213 AEBP1Q8IUX7 1158 aa6□□□□□ -1.45
USP54-217ENST00000498213 SHKBP1Q8TBC3 707 aa6□□□□□ -1.45
USP54-217ENST00000498213 BCO2Q9BYV7 579 aa6□□□□□ -1.45
USP54-217ENST00000498213 AKAP2Q9Y2D5 859 aa6□□□□□ -1.45
USP54-217ENST00000498213 ROBO2Q9HCK4 1378 aa6□□□□□ -1.45
USP54-217ENST00000498213 PLCH1Q4KWH8 1693 aa6□□□□□ -1.45
USP54-217ENST00000498213 SPATA31A1Q5TZJ5 1347 aa5.99□□□□□ -1.45
USP54-217ENST00000498213 MYOM3Q5VTT5 1437 aa5.99□□□□□ -1.45
USP54-217ENST00000498213 FAM95CA0A1B0GW59 222 aa5.99□□□□□ -1.45
USP54-217ENST00000498213 PLSCR1O15162 318 aa5.99□□□□□ -1.45
USP54-217ENST00000498213 TIAF1O95411 115 aa5.99□□□□□ -1.45
USP54-217ENST00000498213 RAB6AP20340 208 aa5.99□□□□□ -1.45
USP54-217ENST00000498213 DYMQ7RTS9 669 aa5.99□□□□□ -1.45
USP54-217ENST00000498213 ASB16Q96NS5 453 aa5.99□□□□□ -1.45
USP54-217ENST00000498213 TRIM56Q9BRZ2 755 aaKnown RBP5.99□□□□□ -1.45
USP54-217ENST00000498213 NRSN2Q9GZP1 204 aa5.99□□□□□ -1.45
USP54-217ENST00000498213 ABCC5O15440 1437 aa5.99□□□□□ -1.45
USP54-217ENST00000498213 ERBINQ96RT1 1412 aa5.99□□□□□ -1.45
USP54-217ENST00000498213 ADCY9O60503 1353 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 KIF15Q9NS87 1388 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 MYO5BQ9ULV0 1848 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 DSC3Q14574 896 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 TXNRD1Q16881 649 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 ALG1LQ6GMV1 187 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 NXPE4Q6UWF7 544 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 FBXL6Q8N531 539 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 FBF1Q8TES7 1133 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 FBLIM1Q8WUP2 373 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms