RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 FBXO33Q7Z6M2 555 aa12.6□□□□□ -0.39
PDLIM1-205ENST00000493949 ANKRD13CQ8N6S4 541 aa12.6□□□□□ -0.39
PDLIM1-205ENST00000493949 TRIB2Q92519 343 aa12.6□□□□□ -0.39
PDLIM1-205ENST00000493949 LBHD1Q9BQE6 289 aaPredicted RBP12.6□□□□□ -0.39
PDLIM1-205ENST00000493949 IQSEC3Q9UPP2 1182 aaPredicted RBP12.6□□□□□ -0.39
PDLIM1-205ENST00000493949 ZKSCAN5Q9Y2L8 839 aa12.6□□□□□ -0.39
PDLIM1-205ENST00000493949 ZHX2Q9Y6X8 837 aa12.6□□□□□ -0.39
PDLIM1-205ENST00000493949 MYO9BQ13459 2157 aa12.6□□□□□ -0.39
PDLIM1-205ENST00000493949 MAST3O60307 1309 aa12.6□□□□□ -0.39
PDLIM1-205ENST00000493949 PHF20L1A8MW92 1017 aa12.59□□□□□ -0.39
PDLIM1-205ENST00000493949 DYNC1I1O14576 645 aa12.59□□□□□ -0.39
PDLIM1-205ENST00000493949 PDIA4P13667 645 aaKnown RBP12.59□□□□□ -0.39
PDLIM1-205ENST00000493949 PTPRAP18433 802 aa12.59□□□□□ -0.39
PDLIM1-205ENST00000493949 MAP3K12Q12852 859 aa12.59□□□□□ -0.39
PDLIM1-205ENST00000493949 UVSSAQ2YD98 709 aa12.59□□□□□ -0.39
PDLIM1-205ENST00000493949 GADL1Q6ZQY3 521 aa12.59□□□□□ -0.39
PDLIM1-205ENST00000493949 SCYL3Q8IZE3 742 aa12.59□□□□□ -0.39
PDLIM1-205ENST00000493949 SRCIN1Q9C0H9 1055 aa12.59□□□□□ -0.39
PDLIM1-205ENST00000493949 AGTPBP1Q9UPW5 1226 aa12.59□□□□□ -0.39
PDLIM1-205ENST00000493949 CD2BP2O95400 341 aaKnown RBP12.58□□□□□ -0.4
PDLIM1-205ENST00000493949 GCLCP48506 637 aaPredicted RBP12.58□□□□□ -0.4
PDLIM1-205ENST00000493949 CUL4AQ13619 759 aa12.58□□□□□ -0.4
PDLIM1-205ENST00000493949 LINS1Q8NG48 757 aa12.58□□□□□ -0.4
PDLIM1-205ENST00000493949 PUS3Q9BZE2 481 aaKnown RBP12.58□□□□□ -0.4
PDLIM1-205ENST00000493949 PNMA3Q9UL41 463 aa12.58□□□□□ -0.4
PDLIM1-205ENST00000493949 CHD9Q3L8U1 2897 aa12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 F6X3S4 739 aa12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 LETM1O95202 739 aaPredicted RBP12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 XRCC5P13010 732 aaKnown RBP12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 MAP3K10Q02779 954 aa12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 FLIIQ13045 1269 aa12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 SHHQ15465 462 aa12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 LMBR1LQ6UX01 489 aa12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 USP38Q8NB14 1042 aa12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 DNAAF4Q8WXU2 420 aa12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 STK31Q9BXU1 1019 aa12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 CNNM1Q9NRU3 951 aa12.57□□□□□ -0.4
PDLIM1-205ENST00000493949 ATAD5Q96QE3 1844 aa12.56□□□□□ -0.4
PDLIM1-205ENST00000493949 CHAF1AQ13111 956 aaPredicted RBP12.56□□□□□ -0.4
PDLIM1-205ENST00000493949 FKBP5Q13451 457 aaPredicted RBP12.56□□□□□ -0.4
PDLIM1-205ENST00000493949 CCDC57Q2TAC2 916 aa12.56□□□□□ -0.4
PDLIM1-205ENST00000493949 MCTP1Q6DN14 999 aa12.56□□□□□ -0.4
PDLIM1-205ENST00000493949 CEP85Q6P2H3 762 aa12.56□□□□□ -0.4
PDLIM1-205ENST00000493949 TRMT44Q8IYL2 757 aaKnown RBP12.56□□□□□ -0.4
PDLIM1-205ENST00000493949 PICK1Q9NRD5 415 aa12.56□□□□□ -0.4
PDLIM1-205ENST00000493949 FAM198AQ9UFP1 575 aa12.56□□□□□ -0.4
PDLIM1-205ENST00000493949 ATN1P54259 1190 aaPredicted RBP12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 TCP10Q12799 353 aa12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 NFIAQ12857 509 aa12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 C9orf50Q5SZB4 431 aa12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 CAVIN1Q6NZI2 390 aaKnown RBP12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 CDC42EP5Q6NZY7 148 aa12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 SASS6Q6UVJ0 657 aa12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 TMEM87AQ8NBN3 555 aa12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 PROCA1Q8NCQ7 364 aaPredicted RBP12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 ATXN2LQ8WWM7 1075 aaKnown RBP12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 PKNOX2Q96KN3 472 aa12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 SCUBE2Q9NQ36 999 aa12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 REV3LO60673 3130 aa12.55□□□□□ -0.4
PDLIM1-205ENST00000493949 MYH2Q9UKX2 1941 aa12.54□□□□□ -0.4
PDLIM1-205ENST00000493949 TPM3P06753 285 aa12.54□□□□□ -0.4
PDLIM1-205ENST00000493949 NCLP19338 710 aaKnown RBP12.54□□□□□ -0.4
PDLIM1-205ENST00000493949 SDSP20132 328 aa12.54□□□□□ -0.4
PDLIM1-205ENST00000493949 HMGN5P82970 282 aaKnown RBP12.54□□□□□ -0.4
PDLIM1-205ENST00000493949 CACNB2Q08289 660 aaPredicted RBP12.54□□□□□ -0.4
PDLIM1-205ENST00000493949 TAF7LQ5H9L4 462 aa12.54□□□□□ -0.4
PDLIM1-205ENST00000493949 TREML2Q5T2D2 321 aa12.54□□□□□ -0.4
PDLIM1-205ENST00000493949 VPS37DQ86XT2 251 aa12.54□□□□□ -0.4
PDLIM1-205ENST00000493949 MORF4L1Q9UBU8 362 aa12.54□□□□□ -0.4
PDLIM1-205ENST00000493949 CTNND1O60716 968 aaKnown RBP12.53□□□□□ -0.4
PDLIM1-205ENST00000493949 BRD1O95696 1058 aa12.53□□□□□ -0.4
PDLIM1-205ENST00000493949 SOCS4Q8WXH5 440 aa12.53□□□□□ -0.4
PDLIM1-205ENST00000493949 USP6NLQ92738 828 aa12.53□□□□□ -0.4
PDLIM1-205ENST00000493949 FAM163AQ96GL9 167 aaPredicted RBP12.53□□□□□ -0.4
PDLIM1-205ENST00000493949 PRIMPOLQ96LW4 560 aa12.53□□□□□ -0.4
PDLIM1-205ENST00000493949 PRKAG2Q9UGJ0 569 aa12.53□□□□□ -0.4
PDLIM1-205ENST00000493949 DAGLAQ9Y4D2 1042 aa12.53□□□□□ -0.4
PDLIM1-205ENST00000493949 MUC6Q6W4X9 2439 aa12.53□□□□□ -0.4
PDLIM1-205ENST00000493949 TRIM75PA6NK02 468 aa12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 SLURP2P0DP57 97 aa12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 CYP2B6P20813 491 aa12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 CCND3P30281 292 aaPredicted RBP12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 PABPC4Q13310 644 aaKnown RBP eCLIP12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 CAVIN4Q5BKX8 364 aa12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 BEND3Q5T5X7 828 aa12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 ZFPM1Q8IX07 1006 aa12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 ADAMTS19Q8TE59 1207 aa12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 ASB2Q96Q27 587 aa12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 NUDT12Q9BQG2 462 aa12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 SENP6Q9GZR1 1112 aaPredicted RBP12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 MROH5Q6ZUA9 1318 aa12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 TCF20Q9UGU0 1960 aaKnown RBP12.52□□□□□ -0.41
PDLIM1-205ENST00000493949 GNAI3P08754 354 aa12.51□□□□□ -0.41
PDLIM1-205ENST00000493949 GRIN2CQ14957 1233 aa12.51□□□□□ -0.41
PDLIM1-205ENST00000493949 KAZALD1Q96I82 304 aa12.51□□□□□ -0.41
PDLIM1-205ENST00000493949 C1QTNF1Q9BXJ1 281 aa12.51□□□□□ -0.41
PDLIM1-205ENST00000493949 IDI2Q9BXS1 227 aa12.51□□□□□ -0.41
PDLIM1-205ENST00000493949 RBSNQ9H1K0 784 aa12.51□□□□□ -0.41
PDLIM1-205ENST00000493949 TSPY26PQ9H489 355 aa12.51□□□□□ -0.41
PDLIM1-205ENST00000493949 SALL3Q9BXA9 1300 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms