RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 SPP2Q13103 211 aa12.94□□□□□ -0.34
COL6A3-214ENST00000493608 TTF1Q15361 905 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-214ENST00000493608 SHROOM1Q2M3G4 852 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-214ENST00000493608 PRRT2Q7Z6L0 340 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-214ENST00000493608 CRACR2BQ8N4Y2 399 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-214ENST00000493608 TRIM34Q9BYJ4 488 aa12.94□□□□□ -0.34
COL6A3-214ENST00000493608 ZCCHC17Q9NP64 241 aaKnown RBP12.94□□□□□ -0.34
COL6A3-214ENST00000493608 PCDHB15Q9Y5E8 787 aa12.94□□□□□ -0.34
COL6A3-214ENST00000493608 ZNF532Q9HCE3 1301 aa12.93□□□□□ -0.34
COL6A3-214ENST00000493608 COL2A1P02458 1487 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-214ENST00000493608 MAGEB6P1A0A0J9YX57 407 aa12.93□□□□□ -0.34
COL6A3-214ENST00000493608 GDF11O95390 407 aa12.93□□□□□ -0.34
COL6A3-214ENST00000493608 MLLT1Q03111 559 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-214ENST00000493608 C17orf99Q6UX52 265 aa12.93□□□□□ -0.34
COL6A3-214ENST00000493608 FASTKD5Q7L8L6 764 aaKnown RBP12.93□□□□□ -0.34
COL6A3-214ENST00000493608 FOXP4Q8IVH2 680 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-214ENST00000493608 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.93□□□□□ -0.34
COL6A3-214ENST00000493608 DNAJC18Q9H819 358 aa12.93□□□□□ -0.34
COL6A3-214ENST00000493608 HERC5Q9UII4 1024 aaKnown RBP12.93□□□□□ -0.34
COL6A3-214ENST00000493608 IGSF3O75054 1194 aa12.92□□□□□ -0.34
COL6A3-214ENST00000493608 CHGBP05060 677 aa12.92□□□□□ -0.34
COL6A3-214ENST00000493608 ATP5JP18859 108 aa12.92□□□□□ -0.34
COL6A3-214ENST00000493608 LACTBP83111 547 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-214ENST00000493608 CRBNQ96SW2 442 aa12.92□□□□□ -0.34
COL6A3-214ENST00000493608 RIOK1Q9BRS2 568 aaKnown RBP12.92□□□□□ -0.34
COL6A3-214ENST00000493608 DCTPP1Q9H773 170 aa12.92□□□□□ -0.34
COL6A3-214ENST00000493608 PAG1Q9NWQ8 432 aa12.92□□□□□ -0.34
COL6A3-214ENST00000493608 TCRBV5S4A2TA0A5A2 114 aa12.91□□□□□ -0.34
COL6A3-214ENST00000493608 USP17L5A8MUK1 530 aa12.91□□□□□ -0.34
COL6A3-214ENST00000493608 HLA-DOAP06340 250 aa12.91□□□□□ -0.34
COL6A3-214ENST00000493608 CTGFP29279 349 aa12.91□□□□□ -0.34
COL6A3-214ENST00000493608 HMGCS2P54868 508 aa12.91□□□□□ -0.34
COL6A3-214ENST00000493608 KIF22Q14807 665 aa12.91□□□□□ -0.34
COL6A3-214ENST00000493608 TREML2Q5T2D2 321 aa12.91□□□□□ -0.34
COL6A3-214ENST00000493608 TSHZ3Q63HK5 1081 aa12.91□□□□□ -0.34
COL6A3-214ENST00000493608 METTL16Q86W50 562 aaKnown RBP12.91□□□□□ -0.34
COL6A3-214ENST00000493608 ZNF280CQ8ND82 737 aa12.91□□□□□ -0.34
COL6A3-214ENST00000493608 HAUS7Q99871 368 aa12.91□□□□□ -0.34
COL6A3-214ENST00000493608 PTCH2Q9Y6C5 1203 aa12.91□□□□□ -0.34
COL6A3-214ENST00000493608 ADGRA2Q96PE1 1338 aa12.9□□□□□ -0.34
COL6A3-214ENST00000493608 MYH7P12883 1935 aa12.9□□□□□ -0.34
COL6A3-214ENST00000493608 MYCP01106 439 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-214ENST00000493608 PSMC4P43686 418 aa12.9□□□□□ -0.34
COL6A3-214ENST00000493608 PLCD1P51178 756 aa12.9□□□□□ -0.34
COL6A3-214ENST00000493608 ARHGEF6Q15052 776 aa12.9□□□□□ -0.34
COL6A3-214ENST00000493608 LCORLQ8N3X6 602 aa12.9□□□□□ -0.34
COL6A3-214ENST00000493608 SDR42E1Q8WUS8 393 aa12.9□□□□□ -0.34
COL6A3-214ENST00000493608 PARK7Q99497 189 aaKnown RBP12.9□□□□□ -0.34
COL6A3-214ENST00000493608 ARMT1Q9H993 441 aa12.9□□□□□ -0.34
COL6A3-214ENST00000493608 DOCK3Q8IZD9 2030 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 KIAA0100Q14667 2235 aaKnown RBP12.89□□□□□ -0.35
COL6A3-214ENST00000493608 MGAMO43451 1857 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 PRKAB2O43741 272 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 FMNL1O95466 1100 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-214ENST00000493608 POLR3DP05423 398 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-214ENST00000493608 ADD2P35612 726 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 CERS3Q8IU89 383 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 ZDHHC16Q969W1 377 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 TRIM47Q96LD4 638 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 SLC4A5Q9BY07 1137 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 ADAM33Q9BZ11 813 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 CRNKL1Q9BZJ0 848 aaKnown RBP12.89□□□□□ -0.35
COL6A3-214ENST00000493608 MCM9Q9NXL9 1143 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 AGTPBP1Q9UPW5 1226 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 VPS9D1Q9Y2B5 631 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 BAZ2AQ9UIF9 1905 aaKnown RBP12.89□□□□□ -0.35
COL6A3-214ENST00000493608 CENPFP49454 3210 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 NAV1Q8NEY1 1877 aa12.89□□□□□ -0.35
COL6A3-214ENST00000493608 MBD4O95243 580 aa12.88□□□□□ -0.35
COL6A3-214ENST00000493608 GH2P01242 217 aa12.88□□□□□ -0.35
COL6A3-214ENST00000493608 ASNSP08243 561 aa12.88□□□□□ -0.35
COL6A3-214ENST00000493608 CYP2D6P10635 497 aa12.88□□□□□ -0.35
COL6A3-214ENST00000493608 BCRP11274 1271 aa12.88□□□□□ -0.35
COL6A3-214ENST00000493608 MTMR2Q13614 643 aa12.88□□□□□ -0.35
COL6A3-214ENST00000493608 TTC6Q86TZ1 520 aa12.88□□□□□ -0.35
COL6A3-214ENST00000493608 SMCR8Q8TEV9 937 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-214ENST00000493608 AS3MTQ9HBK9 375 aa12.88□□□□□ -0.35
COL6A3-214ENST00000493608 ECHDC1Q9NTX5 307 aa12.88□□□□□ -0.35
COL6A3-214ENST00000493608 SERPINB13Q9UIV8 391 aa12.88□□□□□ -0.35
COL6A3-214ENST00000493608 ZBTB21Q9ULJ3 1066 aa12.88□□□□□ -0.35
COL6A3-214ENST00000493608 HTTP42858 3142 aa12.87□□□□□ -0.35
COL6A3-214ENST00000493608 OSBPP22059 807 aa12.87□□□□□ -0.35
COL6A3-214ENST00000493608 CERKLQ49MI3 558 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-214ENST00000493608 SLC9C1Q4G0N8 1177 aa12.87□□□□□ -0.35
COL6A3-214ENST00000493608 TATDN1Q6P1N9 297 aa12.87□□□□□ -0.35
COL6A3-214ENST00000493608 TMED8Q6PL24 325 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-214ENST00000493608 ANKRD13CQ8N6S4 541 aa12.87□□□□□ -0.35
COL6A3-214ENST00000493608 PROCA1Q8NCQ7 364 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-214ENST00000493608 OTUD7AQ8TE49 926 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-214ENST00000493608 SH3TC2Q8TF17 1288 aa12.87□□□□□ -0.35
COL6A3-214ENST00000493608 WDR18Q9BV38 432 aa12.87□□□□□ -0.35
COL6A3-214ENST00000493608 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.87□□□□□ -0.35
COL6A3-214ENST00000493608 DCP1AQ9NPI6 582 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-214ENST00000493608 SLC45A1Q9Y2W3 748 aa12.87□□□□□ -0.35
COL6A3-214ENST00000493608 PCDHGA10Q9Y5H3 936 aa12.87□□□□□ -0.35
COL6A3-214ENST00000493608 LOC285556D6RIA3 1793 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 SMIM22K7EJ46 135 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 PEX10O60683 326 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 PTPREP23469 700 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 SHMT1P34896 483 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms