RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 JPH1Q9HDC5 661 aaPredicted RBP6.21□□□□□ -1.41
VPS13A-212ENST00000493341 HIF3AQ9Y2N7 669 aa6.21□□□□□ -1.41
VPS13A-212ENST00000493341 NEURL1BA8MQ27 555 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 FSCN2O14926 492 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 ST8SIA5O15466 376 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 TSPAN6O43657 245 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 ITGAVP06756 1048 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 SLFN14P0C7P3 912 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 GBP1P32455 592 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 GRIA2P42262 883 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 NEK4P51957 841 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 NLRP12P59046 1061 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 ZC3H12AQ5D1E8 599 aaKnown RBP6.21□□□□□ -1.42
VPS13A-212ENST00000493341 PPFIBP1Q86W92 1011 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 MCATQ8IVS2 390 aaKnown RBP6.21□□□□□ -1.42
VPS13A-212ENST00000493341 VWA5B2Q8N398 1253 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 RIN3Q8TB24 985 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 TTC9Q92623 222 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 KLHDC7BQ96G42 594 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 WNT10AQ9GZT5 417 aa6.21□□□□□ -1.42
VPS13A-212ENST00000493341 AVENQ9NQS1 362 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-212ENST00000493341 INTS7Q9NVH2 962 aaKnown RBP6.21□□□□□ -1.42
VPS13A-212ENST00000493341 SUCOQ9UBS9 1254 aaKnown RBP6.21□□□□□ -1.42
VPS13A-212ENST00000493341 PRODHO43272 600 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 RASGRP1O95267 797 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 MX2P20592 715 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 ZNF143P52747 638 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-212ENST00000493341 ITKQ08881 620 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 NSMFQ6X4W1 530 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 SLFN12Q8IYM2 578 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 WDR66Q8TBY9 1149 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 WNT8BQ93098 351 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 SPOCK3Q9BQ16 436 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 DPH2Q9BQC3 489 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-212ENST00000493341 MRPL4Q9BYD3 311 aaKnown RBP6.2□□□□□ -1.42
VPS13A-212ENST00000493341 APEX2Q9UBZ4 518 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 SFMBT1Q9UHJ3 866 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 SHTN1A0MZ66 631 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 C9IYK1 514 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 KIF3BO15066 747 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 DGAT1O75907 488 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 EYA4O95677 639 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 PABPC1P11940 636 aaKnown RBP6.2□□□□□ -1.42
VPS13A-212ENST00000493341 RAB27AP51159 221 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 RHBDL3P58872 404 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 MCL1Q07820 350 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 KIF4BQ2VIQ3 1234 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 MAP9Q49MG5 647 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 CRIPAKQ8N1N5 446 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 PPM1KQ8N3J5 372 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 DDX1Q92499 740 aaKnown RBP6.2□□□□□ -1.42
VPS13A-212ENST00000493341 MTMR8Q96EF0 704 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 ASPSCR1Q9BZE9 553 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 OSGEPQ9NPF4 335 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 TJP2Q9UDY2 1190 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 SUSD2Q9UGT4 822 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 NDOR1Q9UHB4 597 aa6.2□□□□□ -1.42
VPS13A-212ENST00000493341 RGS13O14921 159 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 ALAS2P22557 587 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 GNALP38405 381 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 BAG6P46379 1132 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 SUMO1P63165 101 aaKnown RBP6.19□□□□□ -1.42
VPS13A-212ENST00000493341 MTMR1Q13613 665 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 DCAF15Q66K64 600 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 FCHSD1Q86WN1 690 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 ZNF227Q86WZ6 799 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 TMEM87BQ96K49 555 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 RPS6KC1Q96S38 1066 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 RAD18Q9NS91 495 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 SLC5A4Q9NY91 659 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 ZIM2Q9NZV7 527 aa6.19□□□□□ -1.42
VPS13A-212ENST00000493341 ELOA3CA0A087WX78 387 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-212ENST00000493341 ELOA3DA6NLF2 546 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-212ENST00000493341 TBX1O43435 398 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 CLEC3AO75596 197 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 UBOX5O94941 541 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 SCGB1D2O95969 90 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 MAP7Q14244 749 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 GRIK5Q16478 980 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 ELOA3BQ3SY89 546 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 LHFPL2Q6ZUX7 228 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 SMC5Q8IY18 1101 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 CCDC144CPQ8IYA2 1237 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 AHI1Q8N157 1196 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 ELOA3Q8NG57 546 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 ZNF512BQ96KM6 892 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-212ENST00000493341 WDR18Q9BV38 432 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 CBFA2T2O43439 604 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 AOC2O75106 756 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 DNAJC8O75937 253 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-212ENST00000493341 FGFR1P11362 822 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 RING1Q06587 406 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 PCBP1Q15365 356 aaKnown RBP eCLIP6.18□□□□□ -1.42
VPS13A-212ENST00000493341 SV2AQ7L0J3 742 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 FAM9AQ8IZU1 332 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-212ENST00000493341 CCDC74BQ96LY2 380 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 CCDC8Q9H0W5 538 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-212ENST00000493341 AAASQ9NRG9 546 aa6.18□□□□□ -1.42
VPS13A-212ENST00000493341 TNPO3Q9Y5L0 923 aaKnown RBP6.18□□□□□ -1.42
VPS13A-212ENST00000493341 FAM83GA6ND36 823 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms