RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 C1orf115Q9H7X2 142 aa11.09□□□□□ -0.63
HDAC3-212ENST00000492407 TXNRD2Q9NNW7 524 aa11.09□□□□□ -0.63
HDAC3-212ENST00000492407 ZBED9Q6R2W3 1325 aa11.09□□□□□ -0.63
HDAC3-212ENST00000492407 HMMRO75330 724 aa11.08□□□□□ -0.64
HDAC3-212ENST00000492407 ZKSCAN1P17029 563 aaPredicted RBP11.08□□□□□ -0.64
HDAC3-212ENST00000492407 ABCB5Q2M3G0 1257 aa11.08□□□□□ -0.64
HDAC3-212ENST00000492407 Q3C1V9 767 aa11.08□□□□□ -0.64
HDAC3-212ENST00000492407 GPR153Q6NV75 609 aa11.08□□□□□ -0.64
HDAC3-212ENST00000492407 CATSPERGQ6ZRH7 1159 aa11.08□□□□□ -0.64
HDAC3-212ENST00000492407 GPR142Q7Z601 462 aa11.08□□□□□ -0.64
HDAC3-212ENST00000492407 AACSQ86V21 672 aa11.08□□□□□ -0.64
HDAC3-212ENST00000492407 RHPN1Q8TCX5 695 aa11.08□□□□□ -0.64
HDAC3-212ENST00000492407 KIF1BPQ96EK5 621 aa11.08□□□□□ -0.64
HDAC3-212ENST00000492407 APBA2Q99767 749 aa11.08□□□□□ -0.64
HDAC3-212ENST00000492407 SAP30BPQ9UHR5 308 aaKnown RBP11.08□□□□□ -0.64
HDAC3-212ENST00000492407 MAGEB6P1A0A0J9YX57 407 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 SLC15A5A6NIM6 579 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 RAB11FIP3O75154 756 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 HOXC6P09630 235 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 PRKAR2AP13861 404 aaKnown RBP11.07□□□□□ -0.64
HDAC3-212ENST00000492407 CYP2B6P20813 491 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 GABPAQ06546 454 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 SLC9C2Q5TAH2 1124 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 MIGA1Q8NAN2 632 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 FEZ1Q99689 392 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 CRNKL1Q9BZJ0 848 aaKnown RBP11.07□□□□□ -0.64
HDAC3-212ENST00000492407 C11orf49Q9H6J7 331 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 ANTXR1Q9H6X2 564 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 HOXC10Q9NYD6 342 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 EXOC6BQ9Y2D4 811 aa11.07□□□□□ -0.64
HDAC3-212ENST00000492407 CEP290O15078 2479 aa11.06□□□□□ -0.64
HDAC3-212ENST00000492407 STRNO43815 780 aa11.06□□□□□ -0.64
HDAC3-212ENST00000492407 MSCO60682 206 aa11.06□□□□□ -0.64
HDAC3-212ENST00000492407 POLR3DP05423 398 aaPredicted RBP11.06□□□□□ -0.64
HDAC3-212ENST00000492407 SHMT1P34896 483 aa11.06□□□□□ -0.64
HDAC3-212ENST00000492407 MNX1P50219 401 aaPredicted RBP11.06□□□□□ -0.64
HDAC3-212ENST00000492407 CACNB2Q08289 660 aaPredicted RBP11.06□□□□□ -0.64
HDAC3-212ENST00000492407 MAP2K5Q13163 448 aa11.06□□□□□ -0.64
HDAC3-212ENST00000492407 RAB3GAP1Q15042 981 aa11.06□□□□□ -0.64
HDAC3-212ENST00000492407 EDC3Q96F86 508 aaKnown RBP11.06□□□□□ -0.64
HDAC3-212ENST00000492407 GDF15Q99988 308 aa11.06□□□□□ -0.64
HDAC3-212ENST00000492407 SWAP70Q9UH65 585 aa11.06□□□□□ -0.64
HDAC3-212ENST00000492407 DDX19BQ9UMR2 479 aa11.06□□□□□ -0.64
HDAC3-212ENST00000492407 SIPA1L1O43166 1804 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 FOCADQ5VW36 1801 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 CNMDO75829 334 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 IFIT2P09913 472 aaKnown RBP11.05□□□□□ -0.64
HDAC3-212ENST00000492407 COL6A1P12109 1028 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 PDE6AP16499 860 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 VCAM1P19320 739 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 PTPREP23469 700 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 PLCD1P51178 756 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 TRIM32Q13049 653 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 COG2Q14746 738 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 SHROOM1Q2M3G4 852 aaPredicted RBP11.05□□□□□ -0.64
HDAC3-212ENST00000492407 MFSD14CQ5VZR4 134 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 ERICH6BQ5W0A0 696 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 LHX8Q68G74 356 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 POTEEQ6S8J3 1075 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 POTEDQ86YR6 584 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 DIS3LQ8TF46 1054 aaKnown RBP11.05□□□□□ -0.64
HDAC3-212ENST00000492407 PORCNQ9H237 461 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 CWC22Q9HCG8 908 aaKnown RBP11.05□□□□□ -0.64
HDAC3-212ENST00000492407 ATP8A2Q9NTI2 1148 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 ZBTB40Q9NUA8 1239 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 ATAD5Q96QE3 1844 aa11.05□□□□□ -0.64
HDAC3-212ENST00000492407 TCRBV5S4A2TA0A5A2 114 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 GUCY1A2P33402 732 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 TMEM179Q6ZVK1 233 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 MIER1Q8N108 512 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 MB21D1Q8N884 522 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 SHCBP1Q8NEM2 672 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 PANK1Q8TE04 598 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 LPAR1Q92633 364 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 CCDC17Q96LX7 622 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 PAGR1Q9BTK6 254 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 SH2D4AQ9H788 454 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 MCM9Q9NXL9 1143 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 STAP2Q9UGK3 403 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 IVNS1ABPQ9Y6Y0 642 aa11.04□□□□□ -0.64
HDAC3-212ENST00000492407 RANBP2P49792 3224 aaKnown RBP11.03□□□□□ -0.64
HDAC3-212ENST00000492407 SPDYE16A6NNV3 312 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-212ENST00000492407 IGHA2P01877 340 aa11.03□□□□□ -0.64
HDAC3-212ENST00000492407 ATP5JP18859 108 aa11.03□□□□□ -0.64
HDAC3-212ENST00000492407 GRB14Q14449 540 aa11.03□□□□□ -0.64
HDAC3-212ENST00000492407 LRIT3Q3SXY7 679 aa11.03□□□□□ -0.64
HDAC3-212ENST00000492407 ABRAQ8N0Z2 381 aa11.03□□□□□ -0.64
HDAC3-212ENST00000492407 ACER1Q8TDN7 264 aa11.03□□□□□ -0.64
HDAC3-212ENST00000492407 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.03□□□□□ -0.641e-6■■■■□ 23
HDAC3-212ENST00000492407 RPAP3Q9H6T3 665 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-212ENST00000492407 IL1RAPL2Q9NP60 686 aa11.03□□□□□ -0.64
HDAC3-212ENST00000492407 DCP1AQ9NPI6 582 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-212ENST00000492407 SLC5A4Q9NY91 659 aa11.03□□□□□ -0.64
HDAC3-212ENST00000492407 NDUFB9Q9Y6M9 179 aa11.03□□□□□ -0.64
HDAC3-212ENST00000492407 ZNF532Q9HCE3 1301 aa11.03□□□□□ -0.64
HDAC3-212ENST00000492407 TRIOBPQ9H2D6 2365 aa11.02□□□□□ -0.65
HDAC3-212ENST00000492407 GOLIM4O00461 696 aa11.02□□□□□ -0.65
HDAC3-212ENST00000492407 BRD2P25440 801 aaKnown RBP11.02□□□□□ -0.65
HDAC3-212ENST00000492407 ATP2B2Q01814 1243 aa11.02□□□□□ -0.65
HDAC3-212ENST00000492407 SEPT2Q15019 361 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms