RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 I3L4J1 428 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 LMOD1P29536 600 aaPredicted RBP8□□□□□ -1.13
SYNE1-228ENST00000490135 SYKP43405 635 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 PCYT1AP49585 367 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 GNAQP50148 359 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 USP33Q8TEY7 942 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 BACH1O14867 736 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 ATP11CQ8NB49 1132 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 TDRD7Q8NHU6 1098 aaKnown RBP8□□□□□ -1.13
SYNE1-228ENST00000490135 KCNV2Q8TDN2 545 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 HOOK2Q96ED9 719 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 CCDC42Q96M95 316 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 DDX21Q9NR30 783 aaKnown RBP eCLIP8□□□□□ -1.13
SYNE1-228ENST00000490135 CTTNBP2NLQ9P2B4 639 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 PPP1R9AQ9ULJ8 1098 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 TMCC1O94876 653 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 SLC12A2P55011 1212 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 SNRNP27Q8WVK2 155 aaKnown RBP8□□□□□ -1.13
SYNE1-228ENST00000490135 TEKT1Q969V4 418 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 CDK19Q9BWU1 502 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 CD2BP2O95400 341 aaKnown RBP8□□□□□ -1.13
SYNE1-228ENST00000490135 KCNB1Q14721 858 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 INAQ16352 499 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 CLEC17AQ6ZS10 378 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 CCDC197Q8NCU1 140 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 CEP70Q8NHQ1 597 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 JPH4Q96JJ6 628 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 NOX5Q96PH1 765 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 FNBP1Q96RU3 617 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 BEGAINQ9BUH8 593 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 EPC1Q9H2F5 836 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 GPHNQ9NQX3 736 aaPredicted RBP8□□□□□ -1.13
SYNE1-228ENST00000490135 BAG5Q9UL15 447 aa8□□□□□ -1.13
SYNE1-228ENST00000490135 ARAP1Q96P48 1450 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 PALM3A6NDB9 673 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-228ENST00000490135 PDHBP11177 359 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 H2AFXP16104 143 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-228ENST00000490135 NAPAP54920 295 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 RPS6KA2Q15349 733 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 FAM133BQ5BKY9 247 aaKnown RBP7.99□□□□□ -1.13
SYNE1-228ENST00000490135 SPOUT1Q5T280 376 aaKnown RBP7.99□□□□□ -1.13
SYNE1-228ENST00000490135 LGSNQ5TDP6 509 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 LZICQ8WZA0 190 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 ATP2A3Q93084 1043 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 EVI5LQ96CN4 794 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 IL17RAQ96F46 866 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 PRAM1Q96QH2 718 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 TTF2Q9UNY4 1162 aaKnown RBP7.99□□□□□ -1.13
SYNE1-228ENST00000490135 BZW2Q9Y6E2 419 aaKnown RBP7.99□□□□□ -1.13
SYNE1-228ENST00000490135 IMPDH2P12268 514 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 BIRC3Q13489 604 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 WTAPQ15007 396 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 LIN9Q5TKA1 542 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 KRT79Q5XKE5 535 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 RCSD1Q6JBY9 416 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 TSHZ1Q6ZSZ6 1077 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 NME8Q8N427 588 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 NAP1L4Q99733 375 aaKnown RBP7.99□□□□□ -1.13
SYNE1-228ENST00000490135 TRIM35Q9UPQ4 493 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 CPP00450 1065 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 KRT9P35527 623 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 IFIT1BQ5T764 474 aaKnown RBP7.99□□□□□ -1.13
SYNE1-228ENST00000490135 TMEM154Q6P9G4 183 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 PPP1R42Q7Z4L9 355 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 UBE2Q1Q7Z7E8 422 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 EXOC8Q8IYI6 725 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 EZH1Q92800 747 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-228ENST00000490135 KRT23Q9C075 422 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 XAB2Q9HCS7 855 aaKnown RBP7.99□□□□□ -1.13
SYNE1-228ENST00000490135 ZBTB21Q9ULJ3 1066 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 FLOT1O75955 427 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 FAM200BP0CF97 657 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 FANCCQ00597 558 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 KCTD16Q68DU8 428 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 TBC1D1Q86TI0 1168 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-228ENST00000490135 CASP10Q92851 521 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 MIS18AQ9NYP9 233 aa7.99□□□□□ -1.13
SYNE1-228ENST00000490135 SOS1Q07889 1333 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 SPDYE16A6NNV3 312 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 AKR1B15C9JRZ8 316 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 RFC4P35249 363 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 GGCXP38435 758 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 SPDYE2Q495Y8 402 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 MAP3K21Q5TCX8 1036 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 MYSM1Q5VVJ2 828 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 NOP9Q86U38 636 aaKnown RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 LRRC43Q8N309 656 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 ATL2Q8NHH9 583 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 CXorf38Q8TB03 319 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 ZNF483Q8TF39 744 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 TEX13AQ9BXU3 409 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 CCDC8Q9H0W5 538 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 THEGQ9P2T0 379 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 CHMP2BQ9UQN3 213 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 TDRD9Q8NDG6 1382 aaKnown RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 DIAPH2O60879 1101 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 KBTBD12Q3ZCT8 623 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 CCDC122Q5T0U0 273 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 IFT20Q8IY31 132 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms