RNA–Protein interactions for RNA: ENST00000489215.5

PTPN18-213, Transcript of protein tyrosine phosphatase, non-receptor type 18, human

TSL 4

Gene PTPN18, Length 460 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN18-213	ENST00000489215	GTF3C2	Q8WUA4	911 aa	Predicted RBP	28.73	■■■□□ 2.19
PTPN18-213	ENST00000489215	DYNLL2	Q96FJ2	89 aa		28.72	■■■□□ 2.19
PTPN18-213	ENST00000489215	OSBPL3	Q9H4L5	887 aa		28.72	■■■□□ 2.19
PTPN18-213	ENST00000489215	TDO2	P48775	406 aa		28.71	■■■□□ 2.19
PTPN18-213	ENST00000489215	ARHGAP39	Q9C0H5	1083 aa		28.71	■■■□□ 2.19
PTPN18-213	ENST00000489215	SH2D4A	Q9H788	454 aa		28.71	■■■□□ 2.19
PTPN18-213	ENST00000489215	EMILIN3	Q9NT22	766 aa		28.71	■■■□□ 2.19
PTPN18-213	ENST00000489215		M0R2C6	588 aa		28.7	■■■□□ 2.18
PTPN18-213	ENST00000489215	CAP1	Q01518	475 aa		28.7	■■■□□ 2.18
PTPN18-213	ENST00000489215	SEPT2	Q15019	361 aa		28.7	■■■□□ 2.18
PTPN18-213	ENST00000489215	ANKRD13C	Q8N6S4	541 aa		28.7	■■■□□ 2.18
PTPN18-213	ENST00000489215	TRIM47	Q96LD4	638 aa		28.7	■■■□□ 2.18
PTPN18-213	ENST00000489215	SRRD	Q9UH36	339 aa		28.7	■■■□□ 2.18
PTPN18-213	ENST00000489215	GUCY1A2	P33402	732 aa		28.69	■■■□□ 2.18
PTPN18-213	ENST00000489215	SLC9C1	Q4G0N8	1177 aa		28.69	■■■□□ 2.18
PTPN18-213	ENST00000489215	SLC44A5	Q8NCS7	719 aa		28.69	■■■□□ 2.18
PTPN18-213	ENST00000489215	ARHGEF10L	Q9HCE6	1279 aa		28.69	■■■□□ 2.18
PTPN18-213	ENST00000489215	HELLS	Q9NRZ9	838 aa		28.69	■■■□□ 2.18
PTPN18-213	ENST00000489215	MGAM	O43451	1857 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	CYP2D7	A0A087X1C5	515 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	MINDY4B	A8MYZ0	360 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	TRIM6-TRIM34	B2RNG4	842 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	USP17L15	C9J2P7	530 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	USP17L13	C9JLJ4	530 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	USP17L11	C9JVI0	530 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	USP17L18	D6R9N7	530 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	USP17L22	D6RA61	530 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	USP17L17	D6RBQ6	530 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	USP17L19	D6RCP7	530 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	USP17L20	D6RJB6	530 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	USP17L24	Q0WX57	530 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	IFNL3	Q8IZI9	196 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	ARMC5	Q96C12	935 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	MKNK2	Q9HBH9	465 aa		28.68	■■■□□ 2.18
PTPN18-213	ENST00000489215	SLC3A2	P08195	630 aa	Known RBP	28.67	■■■□□ 2.18
PTPN18-213	ENST00000489215	EVX2	Q03828	476 aa		28.67	■■■□□ 2.18
PTPN18-213	ENST00000489215	PLEKHM2	Q8IWE5	1019 aa		28.67	■■■□□ 2.18
PTPN18-213	ENST00000489215	KANSL2	Q9H9L4	492 aa		28.67	■■■□□ 2.18
PTPN18-213	ENST00000489215	PTCH2	Q9Y6C5	1203 aa		28.67	■■■□□ 2.18
PTPN18-213	ENST00000489215	RAET1E	Q8TD07	263 aa		28.66	■■■□□ 2.18
PTPN18-213	ENST00000489215	ACER1	Q8TDN7	264 aa		28.66	■■■□□ 2.18
PTPN18-213	ENST00000489215	COA7	Q96BR5	231 aa		28.66	■■■□□ 2.18
PTPN18-213	ENST00000489215	SEC62	Q99442	399 aa	Known RBP	28.66	■■■□□ 2.18
PTPN18-213	ENST00000489215	P2RX7	Q99572	595 aa	Known RBP	28.66	■■■□□ 2.18
PTPN18-213	ENST00000489215	NAPB	Q9H115	298 aa		28.66	■■■□□ 2.18
PTPN18-213	ENST00000489215	MORF4L1	Q9UBU8	362 aa		28.66	■■■□□ 2.18
PTPN18-213	ENST00000489215	MYPN	Q86TC9	1320 aa		28.66	■■■□□ 2.18
PTPN18-213	ENST00000489215	ROBO3	Q96MS0	1386 aa		28.65	■■■□□ 2.18
PTPN18-213	ENST00000489215	TNPO2	O14787	897 aa	Known RBP	28.65	■■■□□ 2.18
PTPN18-213	ENST00000489215	AKR1B1	P15121	316 aa		28.65	■■■□□ 2.18
PTPN18-213	ENST00000489215	HERVK_113	P62684	666 aa		28.65	■■■□□ 2.18
PTPN18-213	ENST00000489215	ZYX	Q15942	572 aa	Known RBP	28.65	■■■□□ 2.18
PTPN18-213	ENST00000489215	CTGF	P29279	349 aa		28.64	■■■□□ 2.18
PTPN18-213	ENST00000489215	ICA1	Q05084	483 aa		28.64	■■■□□ 2.18
PTPN18-213	ENST00000489215	LPAR1	Q92633	364 aa		28.64	■■■□□ 2.18
PTPN18-213	ENST00000489215	RILPL2	Q969X0	211 aa		28.64	■■■□□ 2.18
PTPN18-213	ENST00000489215	VCAM1	P19320	739 aa		28.63	■■■□□ 2.17
PTPN18-213	ENST00000489215	MLLT1	Q03111	559 aa	Predicted RBP	28.63	■■■□□ 2.17
PTPN18-213	ENST00000489215	MCMDC2	Q4G0Z9	681 aa		28.63	■■■□□ 2.17
PTPN18-213	ENST00000489215	CATSPERG	Q6ZRH7	1159 aa		28.63	■■■□□ 2.17
PTPN18-213	ENST00000489215	ZNF444	Q8N0Y2	327 aa	Predicted RBP	28.63	■■■□□ 2.17
PTPN18-213	ENST00000489215	GPRC5A	Q8NFJ5	357 aa		28.63	■■■□□ 2.17
PTPN18-213	ENST00000489215	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	28.63	■■■□□ 2.17
PTPN18-213	ENST00000489215	TMX2	Q9Y320	296 aa		28.63	■■■□□ 2.17
PTPN18-213	ENST00000489215	MFAP1	P55081	439 aa	Known RBP	28.62	■■■□□ 2.17
PTPN18-213	ENST00000489215	SOX10	P56693	466 aa		28.62	■■■□□ 2.17
PTPN18-213	ENST00000489215	IRX6	P78412	446 aa	Predicted RBP	28.62	■■■□□ 2.17
PTPN18-213	ENST00000489215	PDE4B	Q07343	736 aa		28.62	■■■□□ 2.17
PTPN18-213	ENST00000489215	TMEM106C	Q9BVX2	250 aa		28.62	■■■□□ 2.17
PTPN18-213	ENST00000489215	ZSWIM8	A7E2V4	1837 aa		28.62	■■■□□ 2.17
PTPN18-213	ENST00000489215	ECM2	O94769	699 aa	Predicted RBP	28.61	■■■□□ 2.17
PTPN18-213	ENST00000489215	HOXC10	Q9NYD6	342 aa		28.61	■■■□□ 2.17
PTPN18-213	ENST00000489215		A0A1W2PRG0	241 aa		28.6	■■■□□ 2.17
PTPN18-213	ENST00000489215	HIP1	O00291	1037 aa		28.6	■■■□□ 2.17
PTPN18-213	ENST00000489215	CCAR1	Q8IX12	1150 aa	Known RBP	28.6	■■■□□ 2.17
PTPN18-213	ENST00000489215	ZNF333	Q96JL9	665 aa		28.6	■■■□□ 2.17
PTPN18-213	ENST00000489215	RABGAP1	Q9Y3P9	1069 aa		28.6	■■■□□ 2.17
PTPN18-213	ENST00000489215	RASA1	P20936	1047 aa		28.59	■■■□□ 2.17
PTPN18-213	ENST00000489215	GRK4	P32298	578 aa		28.59	■■■□□ 2.17
PTPN18-213	ENST00000489215	PRKCZ	Q05513	592 aa		28.59	■■■□□ 2.17
PTPN18-213	ENST00000489215	IRF5	Q13568	498 aa		28.59	■■■□□ 2.17
PTPN18-213	ENST00000489215	LBX2	Q6XYB7	198 aa		28.59	■■■□□ 2.17
PTPN18-213	ENST00000489215	SLAIN1	Q8ND83	568 aa		28.59	■■■□□ 2.17
PTPN18-213	ENST00000489215	RPAP3	Q9H6T3	665 aa	Predicted RBP	28.59	■■■□□ 2.17
PTPN18-213	ENST00000489215	SMIM22	K7EJ46	135 aa		28.58	■■■□□ 2.17
PTPN18-213	ENST00000489215	CCNA1	P78396	465 aa		28.58	■■■□□ 2.17
PTPN18-213	ENST00000489215	PPARA	Q07869	468 aa		28.58	■■■□□ 2.17
PTPN18-213	ENST00000489215	COG2	Q14746	738 aa		28.58	■■■□□ 2.17
PTPN18-213	ENST00000489215	PXYLP1	Q8TE99	480 aa		28.58	■■■□□ 2.17
PTPN18-213	ENST00000489215	VCPKMT	Q9H867	229 aa		28.58	■■■□□ 2.17
PTPN18-213	ENST00000489215	GOPC	Q9HD26	462 aa		28.58	■■■□□ 2.17
PTPN18-213	ENST00000489215	RBPJL	Q9UBG7	517 aa		28.58	■■■□□ 2.17
PTPN18-213	ENST00000489215	EEF2	P13639	858 aa	Known RBP	28.57	■■■□□ 2.16
PTPN18-213	ENST00000489215	MAPK4	P31152	587 aa		28.57	■■■□□ 2.16
PTPN18-213	ENST00000489215	FLT3LG	P49771	235 aa		28.57	■■■□□ 2.16
PTPN18-213	ENST00000489215	ERVK-9	P63128	1117 aa		28.57	■■■□□ 2.16
PTPN18-213	ENST00000489215	ERVK-24	P63145	666 aa		28.57	■■■□□ 2.16
PTPN18-213	ENST00000489215	ALX1	Q15699	326 aa		28.57	■■■□□ 2.16
PTPN18-213	ENST00000489215	SIAH1	Q8IUQ4	282 aa		28.57	■■■□□ 2.16
PTPN18-213	ENST00000489215	SDS	P20132	328 aa		28.56	■■■□□ 2.16

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms