RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 UBE3CQ15386 1083 aa14.84□□□□□ -0.03
SDC3-204ENST00000487984 UBE2Q1Q7Z7E8 422 aa14.84□□□□□ -0.03
SDC3-204ENST00000487984 SLC44A5Q8NCS7 719 aa14.84□□□□□ -0.03
SDC3-204ENST00000487984 GTF3C2Q8WUA4 911 aaPredicted RBP14.84□□□□□ -0.03
SDC3-204ENST00000487984 PAGR1Q9BTK6 254 aa14.84□□□□□ -0.03
SDC3-204ENST00000487984 DCTPP1Q9H773 170 aa14.84□□□□□ -0.03
SDC3-204ENST00000487984 NAV1Q8NEY1 1877 aa14.84□□□□□ -0.03
SDC3-204ENST00000487984 USP17L15C9J2P7 530 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 USP17L13C9JLJ4 530 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 USP17L11C9JVI0 530 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 USP17L18D6R9N7 530 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 USP17L22D6RA61 530 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 USP17L17D6RBQ6 530 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 USP17L19D6RCP7 530 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 USP17L20D6RJB6 530 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 MPHOSPH10O00566 681 aaKnown RBP14.83□□□□□ -0.04
SDC3-204ENST00000487984 SGPL1O95470 568 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 ERVK-9P63128 1117 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 ERVK-24P63145 666 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 USP17L24Q0WX57 530 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 Q3C1V9 767 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 GCC1Q96CN9 775 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 DYNLL2Q96FJ2 89 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 PAK6Q9NQU5 681 aaPredicted RBP14.83□□□□□ -0.04
SDC3-204ENST00000487984 ATP8A2Q9NTI2 1148 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 ECHDC1Q9NTX5 307 aa14.83□□□□□ -0.04
SDC3-204ENST00000487984 CNMDO75829 334 aa14.82□□□□□ -0.04
SDC3-204ENST00000487984 HMGCRP04035 888 aa14.82□□□□□ -0.04
SDC3-204ENST00000487984 MAPK4P31152 587 aa14.82□□□□□ -0.04
SDC3-204ENST00000487984 TSHZ3Q63HK5 1081 aa14.82□□□□□ -0.04
SDC3-204ENST00000487984 CATSPERGQ6ZRH7 1159 aa14.82□□□□□ -0.04
SDC3-204ENST00000487984 DEFB118Q96PH6 123 aa14.82□□□□□ -0.04
SDC3-204ENST00000487984 PUS7LQ9H0K6 701 aaKnown RBP14.82□□□□□ -0.04
SDC3-204ENST00000487984 PORCNQ9H237 461 aa14.82□□□□□ -0.04
SDC3-204ENST00000487984 SWAP70Q9UH65 585 aa14.82□□□□□ -0.04
SDC3-204ENST00000487984 DOCK3Q8IZD9 2030 aa14.82□□□□□ -0.04
SDC3-204ENST00000487984 CYP2D7A0A087X1C5 515 aa14.81□□□□□ -0.04
SDC3-204ENST00000487984 A0A1W2PRG0 241 aa14.81□□□□□ -0.04
SDC3-204ENST00000487984 SMIM22K7EJ46 135 aa14.81□□□□□ -0.04
SDC3-204ENST00000487984 FARP2O94887 1054 aaPredicted RBP14.81□□□□□ -0.04
SDC3-204ENST00000487984 CYP2B6P20813 491 aa14.81□□□□□ -0.04
SDC3-204ENST00000487984 TRIM32Q13049 653 aa14.81□□□□□ -0.04
SDC3-204ENST00000487984 ZSCAN25Q6NSZ9 544 aa14.81□□□□□ -0.04
SDC3-204ENST00000487984 SOCS4Q8WXH5 440 aa14.81□□□□□ -0.04
SDC3-204ENST00000487984 TRIB2Q92519 343 aa14.81□□□□□ -0.04
SDC3-204ENST00000487984 NUDT12Q9BQG2 462 aa14.81□□□□□ -0.04
SDC3-204ENST00000487984 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.81□□□□□ -0.04
SDC3-204ENST00000487984 RPAP3Q9H6T3 665 aaPredicted RBP14.81□□□□□ -0.04
SDC3-204ENST00000487984 RABGAP1Q9Y3P9 1069 aa14.81□□□□□ -0.04
SDC3-204ENST00000487984 SLC4A4Q9Y6R1 1079 aa14.81□□□□□ -0.04
SDC3-204ENST00000487984 USP17L12C9JPN9 530 aa14.8□□□□□ -0.04
SDC3-204ENST00000487984 USP17L21D6R901 530 aa14.8□□□□□ -0.04
SDC3-204ENST00000487984 TFRCP02786 760 aaKnown RBP14.8□□□□□ -0.04
SDC3-204ENST00000487984 AKR1B1P15121 316 aa14.8□□□□□ -0.04
SDC3-204ENST00000487984 C12orf60Q5U649 245 aa14.8□□□□□ -0.04
SDC3-204ENST00000487984 TMEM179Q6ZVK1 233 aa14.8□□□□□ -0.04
SDC3-204ENST00000487984 GPR142Q7Z601 462 aa14.8□□□□□ -0.04
SDC3-204ENST00000487984 CCAR1Q8IX12 1150 aaKnown RBP14.8□□□□□ -0.04
SDC3-204ENST00000487984 GPATCH3Q96I76 525 aa14.8□□□□□ -0.04
SDC3-204ENST00000487984 PCDHB15Q9Y5E8 787 aa14.8□□□□□ -0.04
SDC3-204ENST00000487984 SPDYE16A6NNV3 312 aaPredicted RBP14.79□□□□□ -0.04
SDC3-204ENST00000487984 H0YGN5 161 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 CEP290O15078 2479 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 XRCC5P13010 732 aaKnown RBP14.79□□□□□ -0.04
SDC3-204ENST00000487984 CDK8P49336 464 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 RRP1P56182 461 aaKnown RBP14.79□□□□□ -0.04
SDC3-204ENST00000487984 HABP4Q5JVS0 413 aaKnown RBP14.79□□□□□ -0.04
SDC3-204ENST00000487984 MORN1Q5T089 497 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 LBX2Q6XYB7 198 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 PLEKHH3Q7Z736 793 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 CLEC10AQ8IUN9 316 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 AMOTL1Q8IY63 956 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 KBTBD3Q8NAB2 608 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 USP6NLQ92738 828 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 DPF3Q92784 378 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 DDRGK1Q96HY6 314 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 CRISPLD2Q9H0B8 497 aa14.79□□□□□ -0.04
SDC3-204ENST00000487984 RPTORQ8N122 1335 aa14.78□□□□□ -0.04
SDC3-204ENST00000487984 ICA1Q05084 483 aa14.78□□□□□ -0.04
SDC3-204ENST00000487984 KIAA1755Q5JYT7 1200 aa14.78□□□□□ -0.04
SDC3-204ENST00000487984 CTR9Q6PD62 1173 aa14.78□□□□□ -0.04
SDC3-204ENST00000487984 C16orf86Q6ZW13 317 aa14.78□□□□□ -0.04
SDC3-204ENST00000487984 SIAH1Q8IUQ4 282 aa14.78□□□□□ -0.04
SDC3-204ENST00000487984 STRBPQ96SI9 672 aaKnown RBP14.78□□□□□ -0.04
SDC3-204ENST00000487984 HTATIP2Q9BUP3 242 aa14.78□□□□□ -0.04
SDC3-204ENST00000487984 BTBD7Q9P203 1132 aa14.78□□□□□ -0.04
SDC3-204ENST00000487984 PLXNB2O15031 1838 aa14.78□□□□□ -0.04
SDC3-204ENST00000487984 PRKAR2AP13861 404 aaKnown RBP14.77□□□□□ -0.05
SDC3-204ENST00000487984 ZKSCAN1P17029 563 aaPredicted RBP14.77□□□□□ -0.05
SDC3-204ENST00000487984 CAPN2P17655 700 aa14.77□□□□□ -0.05
SDC3-204ENST00000487984 RGS2P41220 211 aa14.77□□□□□ -0.05
SDC3-204ENST00000487984 CCNA1P78396 465 aa14.77□□□□□ -0.05
SDC3-204ENST00000487984 CCL14Q16627 93 aa14.77□□□□□ -0.05
SDC3-204ENST00000487984 MAP3K21Q5TCX8 1036 aa14.77□□□□□ -0.05
SDC3-204ENST00000487984 OSBP2Q969R2 916 aa14.77□□□□□ -0.05
SDC3-204ENST00000487984 CCDC17Q96LX7 622 aa14.77□□□□□ -0.05
SDC3-204ENST00000487984 APBA2Q99767 749 aa14.77□□□□□ -0.05
SDC3-204ENST00000487984 TANGO6Q9C0B7 1094 aa14.77□□□□□ -0.05
SDC3-204ENST00000487984 CWC22Q9HCG8 908 aaKnown RBP14.77□□□□□ -0.05
SDC3-204ENST00000487984 HMX1Q9NP08 348 aaPredicted RBP14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms