RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 C12orf40Q86WS4 652 aa5.75□□□□□ -1.49
PTCD3-216ENST00000487043 TMEM40Q8WWA1 233 aa5.75□□□□□ -1.49
PTCD3-216ENST00000487043 FAM46AQ96IP4 442 aaKnown RBP5.75□□□□□ -1.49
PTCD3-216ENST00000487043 TM9SF2Q99805 663 aa5.75□□□□□ -1.49
PTCD3-216ENST00000487043 BAZ1BQ9UIG0 1483 aaKnown RBP5.75□□□□□ -1.49
PTCD3-216ENST00000487043 PRR36Q9H6K5 1346 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 ESYT3A0FGR9 886 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 FAM86C2PA6NEL3 165 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 MEIS3P2A8K0S8 358 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 CDC45O75419 566 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 RNF187Q5TA31 235 aaPredicted RBP5.74□□□□□ -1.49
PTCD3-216ENST00000487043 OVOS1Q6IE37 1185 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 CLEC10AQ8IUN9 316 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 FAM178BQ8IXR5 827 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 C19orf47Q8N9M1 422 aaKnown RBP5.74□□□□□ -1.49
PTCD3-216ENST00000487043 UBASH3BQ8TF42 649 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 APPBP2Q92624 585 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 GPATCH3Q96I76 525 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 GMIPQ9P107 970 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 KLHL3Q9UH77 587 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 PFDN2Q9UHV9 154 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 HMGXB3Q12766 1538 aa5.74□□□□□ -1.49
PTCD3-216ENST00000487043 LOC100289279A0A1B0GTE1 492 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 SLC22A31A6NKX4 558 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 DNAJA2O60884 412 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 ADAM11O75078 769 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 WNT11O96014 354 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 BMP3P12645 472 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 SPINK2P20155 84 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 GRK4P32298 578 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 PDE4BQ07343 736 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 ZYXQ15942 572 aaKnown RBP5.73□□□□□ -1.49
PTCD3-216ENST00000487043 PTPROQ16827 1216 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 UNC5AQ6ZN44 842 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 BEND4Q6ZU67 534 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 CYFIP1Q7L576 1253 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 FAM20CQ8IXL6 584 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 SHKBP1Q8TBC3 707 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 ATG4CQ96DT6 458 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 PICK1Q9NRD5 415 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 RAD18Q9NS91 495 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 KDM2BQ8NHM5 1336 aa5.73□□□□□ -1.49
PTCD3-216ENST00000487043 CCDC88BA6NC98 1476 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 PRR19A6NJB7 356 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 DIAPH1O60610 1272 aaKnown RBP5.72□□□□□ -1.49
PTCD3-216ENST00000487043 ADAMTS4O75173 837 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 PGRP06401 933 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 SLFN14P0C7P3 912 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 ACRP10323 421 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 NME1P15531 152 aaKnown RBP5.72□□□□□ -1.49
PTCD3-216ENST00000487043 ETF1P62495 437 aaKnown RBP5.72□□□□□ -1.49
PTCD3-216ENST00000487043 KIF4BQ2VIQ3 1234 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 PLEKHG4Q58EX7 1191 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 ARSHQ5FYA8 562 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 ANKRD34AQ69YU3 496 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 FDX2Q6P4F2 183 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 SPATC1Q76KD6 591 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 NLRC3Q7RTR2 1065 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 FILIP1Q7Z7B0 1213 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 DTX1Q86Y01 620 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 HOMER1Q86YM7 354 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 FAM83CQ9BQN1 747 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 WDR18Q9BV38 432 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 SLKQ9H2G2 1235 aaPredicted RBP5.72□□□□□ -1.49
PTCD3-216ENST00000487043 PCDHB10Q9UN67 800 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 LEMD3Q9Y2U8 911 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 SLC12A7Q9Y666 1083 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 LTBP3Q9NS15 1303 aa5.72□□□□□ -1.49
PTCD3-216ENST00000487043 hCG_2014768A0A024R1R8 64 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 UPK3BL1B0FP48 263 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 WDR64B1ANS9 1081 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 CHURC1-FNTBB4DL54 471 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 UPK3BL2E5RIL1 263 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 GAS2O43903 313 aaKnown RBP5.71□□□□□ -1.5
PTCD3-216ENST00000487043 AOC2O75106 756 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 DLGAP3O95886 979 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 IBSPP21815 317 aaPredicted RBP5.71□□□□□ -1.5
PTCD3-216ENST00000487043 PREPP48147 710 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 SSRP1Q08945 709 aaKnown RBP5.71□□□□□ -1.5
PTCD3-216ENST00000487043 SQSTM1Q13501 440 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 ZC3H12AQ5D1E8 599 aaKnown RBP5.71□□□□□ -1.5
PTCD3-216ENST00000487043 PPM1JQ5JR12 505 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 HP1BP3Q5SSJ5 553 aaPredicted RBP5.71□□□□□ -1.5
PTCD3-216ENST00000487043 MRM1Q6IN84 353 aaKnown RBP5.71□□□□□ -1.5
PTCD3-216ENST00000487043 VHLLQ6RSH7 139 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 TAB3Q8N5C8 712 aaPredicted RBP5.71□□□□□ -1.5
PTCD3-216ENST00000487043 SLC9A7Q96T83 725 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 RUSC1Q9BVN2 902 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 RNF208Q9H0X6 261 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 IFT57Q9NWB7 429 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 HIF3AQ9Y2N7 669 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 TACC3Q9Y6A5 838 aa5.71□□□□□ -1.5
PTCD3-216ENST00000487043 KRTAP4-8A0A0G2JLE6 195 aa5.7□□□□□ -1.5
PTCD3-216ENST00000487043 RAG1P15918 1043 aa5.7□□□□□ -1.5
PTCD3-216ENST00000487043 IGBP1P78318 339 aa5.7□□□□□ -1.5
PTCD3-216ENST00000487043 C2orf27AQ580R0 203 aa5.7□□□□□ -1.5
PTCD3-216ENST00000487043 TMEM201Q5SNT2 666 aa5.7□□□□□ -1.5
PTCD3-216ENST00000487043 INTS3Q68E01 1043 aaKnown RBP5.7□□□□□ -1.5
PTCD3-216ENST00000487043 KIAA1211LQ6NV74 962 aa5.7□□□□□ -1.5
PTCD3-216ENST00000487043 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms