RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-205ENST00000486941 H3BS24 57 aa6.83□□□□□ -1.32
SNRNP40-205ENST00000486941 LDHBP07195 334 aaKnown RBP6.83□□□□□ -1.32
SNRNP40-205ENST00000486941 GRK4P32298 578 aa6.83□□□□□ -1.32
SNRNP40-205ENST00000486941 MLANAQ16655 118 aa6.83□□□□□ -1.32
SNRNP40-205ENST00000486941 PRAMEF13Q5VWM6 474 aa6.83□□□□□ -1.32
SNRNP40-205ENST00000486941 PRR23BQ6ZRT6 265 aa6.83□□□□□ -1.32
SNRNP40-205ENST00000486941 KCT2Q8NC54 265 aa6.83□□□□□ -1.32
SNRNP40-205ENST00000486941 XAGE3Q8WTP9 111 aa6.83□□□□□ -1.32
SNRNP40-205ENST00000486941 SPG7Q9UQ90 795 aa6.83□□□□□ -1.32
SNRNP40-205ENST00000486941 SNCAIPQ9Y6H5 919 aa6.83□□□□□ -1.32
SNRNP40-205ENST00000486941 CST3P01034 146 aaPredicted RBP6.82□□□□□ -1.32
SNRNP40-205ENST00000486941 KCNMB1Q16558 191 aa6.82□□□□□ -1.32
SNRNP40-205ENST00000486941 SFRP5Q5T4F7 317 aa6.82□□□□□ -1.32
SNRNP40-205ENST00000486941 LETMD1Q6P1Q0 360 aa6.82□□□□□ -1.32
SNRNP40-205ENST00000486941 HDXQ7Z353 690 aa6.82□□□□□ -1.32
SNRNP40-205ENST00000486941 TJP2Q9UDY2 1190 aa6.82□□□□□ -1.32
SNRNP40-205ENST00000486941 PTPRGP23470 1445 aa6.82□□□□□ -1.32
SNRNP40-205ENST00000486941 CARMIL1Q5VZK9 1371 aa6.82□□□□□ -1.32
SNRNP40-205ENST00000486941 TSPOAP1O95153 1857 aa6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 ETF1P62495 437 aaKnown RBP6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 TNK2Q07912 1038 aa6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 FBLN7Q53RD9 439 aa6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 CDH24Q86UP0 819 aa6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 C1QL4Q86Z23 238 aa6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 HID1Q8IV36 788 aa6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 MFSD4AQ8N468 514 aa6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 MFSD2AQ8NA29 543 aa6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 FAM84AQ96KN4 292 aa6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 TPX2Q9ULW0 747 aaKnown RBP6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 TTF2Q9UNY4 1162 aaKnown RBP6.81□□□□□ -1.32
SNRNP40-205ENST00000486941 CBX7O95931 251 aa6.8□□□□□ -1.32
SNRNP40-205ENST00000486941 KSR1Q8IVT5 923 aa6.8□□□□□ -1.32
SNRNP40-205ENST00000486941 DPH2Q9BQC3 489 aaPredicted RBP6.8□□□□□ -1.32
SNRNP40-205ENST00000486941 TNIKQ9UKE5 1360 aa6.8□□□□□ -1.32
SNRNP40-205ENST00000486941 KDM6BO15054 1643 aa6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 FAM155AB1AL88 458 aaPredicted RBP6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 ESR1P03372 595 aa6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 TFE3P19532 575 aaPredicted RBP6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 GNA15P30679 374 aa6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 GDNFP39905 211 aa6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 ATP2B2Q01814 1243 aa6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 MAP3K11Q16584 847 aa6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 MEI1Q5TIA1 1274 aa6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 AGMOQ6ZNB7 445 aa6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 UBE2FQ969M7 185 aa6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 Q96M66 194 aa6.79□□□□□ -1.32
SNRNP40-205ENST00000486941 ABCC2Q92887 1545 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 DNAJC25-GNG10A0A024R161 153 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 GLI1P08151 1106 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 CFPP27918 469 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 AFMP43652 599 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 ERVFC1P60507 584 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 RPS26P62854 115 aaKnown RBP6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 KCNA1Q09470 495 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 CCDC85BQ15834 202 aaPredicted RBP6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 RALGPS1Q5JS13 557 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 NPAS4Q8IUM7 802 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 DNAJB8Q8NHS0 232 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 PPP1R13LQ8WUF5 828 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 KIRREL1Q96J84 757 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 ZSWIM5Q9P217 1185 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 AK5Q9Y6K8 562 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 IQGAP2Q13576 1575 aa6.78□□□□□ -1.32
SNRNP40-205ENST00000486941 EIF4BP23588 611 aaKnown RBP6.77□□□□□ -1.33
SNRNP40-205ENST00000486941 LIG3P49916 1009 aa6.77□□□□□ -1.33
SNRNP40-205ENST00000486941 MRPL41Q8IXM3 137 aaKnown RBP6.77□□□□□ -1.33
SNRNP40-205ENST00000486941 DUSP9Q99956 384 aaKnown RBP6.77□□□□□ -1.33
SNRNP40-205ENST00000486941 SP110Q9HB58 689 aa6.77□□□□□ -1.33
SNRNP40-205ENST00000486941 TLR6Q9Y2C9 796 aa6.77□□□□□ -1.33
SNRNP40-205ENST00000486941 UHRF1BP1LA0JNW5 1464 aa6.77□□□□□ -1.33
SNRNP40-205ENST00000486941 PLB1Q6P1J6 1458 aa6.77□□□□□ -1.33
SNRNP40-205ENST00000486941 GLI2P10070 1586 aa6.77□□□□□ -1.33
SNRNP40-205ENST00000486941 PRPF40AO75400 957 aaKnown RBP6.76□□□□□ -1.33
SNRNP40-205ENST00000486941 LCNL1Q6ZST4 164 aa6.76□□□□□ -1.33
SNRNP40-205ENST00000486941 ACSF2Q96CM8 615 aaPredicted RBP6.76□□□□□ -1.33
SNRNP40-205ENST00000486941 TMEM87BQ96K49 555 aa6.76□□□□□ -1.33
SNRNP40-205ENST00000486941 DUSP15Q9H1R2 295 aaPredicted RBP6.76□□□□□ -1.33
SNRNP40-205ENST00000486941 FAM53CQ9NYF3 392 aa6.76□□□□□ -1.33
SNRNP40-205ENST00000486941 CORINQ9Y5Q5 1042 aa6.76□□□□□ -1.33
SNRNP40-205ENST00000486941 ASXL2Q76L83 1435 aa6.76□□□□□ -1.33
SNRNP40-205ENST00000486941 UACAQ9BZF9 1416 aa6.76□□□□□ -1.33
SNRNP40-205ENST00000486941 TTBK1Q5TCY1 1321 aaPredicted RBP6.76□□□□□ -1.33
SNRNP40-205ENST00000486941 CTSHP09668 335 aa6.75□□□□□ -1.33
SNRNP40-205ENST00000486941 C1QTNF9P0C862 333 aa6.75□□□□□ -1.33
SNRNP40-205ENST00000486941 THAP5Q7Z6K1 395 aa6.75□□□□□ -1.33
SNRNP40-205ENST00000486941 BHLHE22Q8NFJ8 381 aaPredicted RBP6.75□□□□□ -1.33
SNRNP40-205ENST00000486941 FRMD6Q96NE9 622 aa6.75□□□□□ -1.33
SNRNP40-205ENST00000486941 DISP1Q96F81 1524 aa6.75□□□□□ -1.33
SNRNP40-205ENST00000486941 PPRC1Q5VV67 1664 aaKnown RBP6.74□□□□□ -1.33
SNRNP40-205ENST00000486941 RAPGEF2Q9Y4G8 1499 aa6.74□□□□□ -1.33
SNRNP40-205ENST00000486941 UPK3BL1B0FP48 263 aa6.74□□□□□ -1.33
SNRNP40-205ENST00000486941 UPK3BL2E5RIL1 263 aa6.74□□□□□ -1.33
SNRNP40-205ENST00000486941 PGRP06401 933 aa6.74□□□□□ -1.33
SNRNP40-205ENST00000486941 PKN1Q16512 942 aa6.74□□□□□ -1.33
SNRNP40-205ENST00000486941 GAB4Q2WGN9 574 aa6.74□□□□□ -1.33
SNRNP40-205ENST00000486941 TMEM67Q5HYA8 995 aa6.74□□□□□ -1.33
SNRNP40-205ENST00000486941 SYDE1Q6ZW31 735 aaPredicted RBP6.74□□□□□ -1.33
SNRNP40-205ENST00000486941 MCATQ8IVS2 390 aaKnown RBP6.74□□□□□ -1.33
SNRNP40-205ENST00000486941 ALPK1Q96QP1 1244 aa6.74□□□□□ -1.33
SNRNP40-205ENST00000486941 SLC38A3Q99624 504 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms