RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 IGHMBP2P38935 993 aaKnown RBP8.53□□□□□ -1.04
HDAC3-209ENST00000486618 IREB2P48200 963 aaKnown RBP8.53□□□□□ -1.04
HDAC3-209ENST00000486618 RAB15P59190 212 aa8.53□□□□□ -1.04
HDAC3-209ENST00000486618 GTF2IP78347 998 aa8.53□□□□□ -1.04
HDAC3-209ENST00000486618 RALBP1Q15311 655 aa8.53□□□□□ -1.04
HDAC3-209ENST00000486618 TTLL11Q8NHH1 800 aa8.53□□□□□ -1.04
HDAC3-209ENST00000486618 JARID2Q92833 1246 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-209ENST00000486618 ZBED3Q96IU2 234 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-209ENST00000486618 SNRKQ9NRH2 765 aa8.53□□□□□ -1.04
HDAC3-209ENST00000486618 TMPRSS4Q9NRS4 437 aa8.53□□□□□ -1.04
HDAC3-209ENST00000486618 ZNF804BA4D1E1 1349 aa8.53□□□□□ -1.04
HDAC3-209ENST00000486618 WTIPA6NIX2 430 aaPredicted RBP8.52□□□□□ -1.05
HDAC3-209ENST00000486618 H3BM21 787 aa8.52□□□□□ -1.05
HDAC3-209ENST00000486618 ERVH48-1M5A8F1 160 aa8.52□□□□□ -1.05
HDAC3-209ENST00000486618 WDHD1O75717 1129 aaPredicted RBP8.52□□□□□ -1.05
HDAC3-209ENST00000486618 KCNJ4P48050 445 aa8.52□□□□□ -1.05
HDAC3-209ENST00000486618 NEXNQ0ZGT2 675 aa8.52□□□□□ -1.05
HDAC3-209ENST00000486618 CRHR2Q13324 411 aa8.52□□□□□ -1.05
HDAC3-209ENST00000486618 WDR43Q15061 677 aaKnown RBP eCLIP8.52□□□□□ -1.05
HDAC3-209ENST00000486618 SLC4A8Q2Y0W8 1093 aa8.52□□□□□ -1.05
HDAC3-209ENST00000486618 CCDC146Q8IYE0 955 aa8.52□□□□□ -1.05
HDAC3-209ENST00000486618 CLMNQ96JQ2 1002 aa8.52□□□□□ -1.05
HDAC3-209ENST00000486618 MBIPQ9NS73 344 aa8.52□□□□□ -1.05
HDAC3-209ENST00000486618 DNMT3LQ9UJW3 386 aa8.52□□□□□ -1.05
HDAC3-209ENST00000486618 LAMB1P07942 1786 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 MARCH6O60337 910 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 GNAI1P63096 354 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 CALD1Q05682 793 aaKnown RBP8.51□□□□□ -1.05
HDAC3-209ENST00000486618 SLC9C1Q4G0N8 1177 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 GORABQ5T7V8 394 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 CCDC30Q5VVM6 783 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 TXNRD3Q86VQ6 643 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 WWC1Q8IX03 1113 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 ZNF333Q96JL9 665 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 MPHOSPH8Q99549 860 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 GREM2Q9H772 168 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 ZFYVE28Q9HCC9 887 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 FZD1Q9UP38 647 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 MAP3K2Q9Y2U5 619 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 PCDHB9Q9Y5E1 797 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 SPEF2Q9C093 1822 aa8.51□□□□□ -1.05
HDAC3-209ENST00000486618 ZNF646O15015 1829 aaPredicted RBP8.5□□□□□ -1.05
HDAC3-209ENST00000486618 ECM29Q5VYK3 1845 aa8.5□□□□□ -1.05
HDAC3-209ENST00000486618 TTLL8A6PVC2 850 aa8.5□□□□□ -1.05
HDAC3-209ENST00000486618 ELL2O00472 640 aaPredicted RBP8.5□□□□□ -1.05
HDAC3-209ENST00000486618 SPINT1O43278 529 aa8.5□□□□□ -1.05
HDAC3-209ENST00000486618 USP2O75604 605 aaPredicted RBP8.5□□□□□ -1.05
HDAC3-209ENST00000486618 TNFAIP1Q13829 316 aa8.5□□□□□ -1.05
HDAC3-209ENST00000486618 KSR2Q6VAB6 950 aa8.5□□□□□ -1.05
HDAC3-209ENST00000486618 CLUAP1Q96AJ1 413 aa8.5□□□□□ -1.05
HDAC3-209ENST00000486618 AGBL1Q96MI9 1066 aa8.5□□□□□ -1.05
HDAC3-209ENST00000486618 CD209Q9NNX6 404 aa8.5□□□□□ -1.05
HDAC3-209ENST00000486618 IGSF5Q9NSI5 407 aa8.5□□□□□ -1.05
HDAC3-209ENST00000486618 NDUFB9Q9Y6M9 179 aa8.5□□□□□ -1.05
HDAC3-209ENST00000486618 PI4KAP2A4QPH2 592 aa8.49□□□□□ -1.05
HDAC3-209ENST00000486618 ZNF853P0CG23 659 aa8.49□□□□□ -1.05
HDAC3-209ENST00000486618 FKBP1AP62942 108 aaKnown RBP8.49□□□□□ -1.05
HDAC3-209ENST00000486618 NR1H3Q13133 447 aa8.49□□□□□ -1.05
HDAC3-209ENST00000486618 KIF22Q14807 665 aa8.49□□□□□ -1.05
HDAC3-209ENST00000486618 TAF1CQ15572 869 aaPredicted RBP8.49□□□□□ -1.05
HDAC3-209ENST00000486618 CFAP100Q494V2 611 aa8.49□□□□□ -1.05
HDAC3-209ENST00000486618 NBPF12Q5TAG4 269 aaPredicted RBP8.49□□□□□ -1.05
HDAC3-209ENST00000486618 SPTY2D1Q68D10 685 aaPredicted RBP8.49□□□□□ -1.05
HDAC3-209ENST00000486618 PI4KAP1Q8N8J0 262 aa8.49□□□□□ -1.05
HDAC3-209ENST00000486618 IRF7Q92985 503 aa8.49□□□□□ -1.05
HDAC3-209ENST00000486618 DRC1Q96MC2 740 aa8.49□□□□□ -1.05
HDAC3-209ENST00000486618 PTPN18Q99952 460 aa8.49□□□□□ -1.05
HDAC3-209ENST00000486618 VEZTQ9HBM0 779 aa8.49□□□□□ -1.05
HDAC3-209ENST00000486618 IFT57Q9NWB7 429 aa8.49□□□□□ -1.05
HDAC3-209ENST00000486618 CLRN2A0PK11 232 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 ANKRD62A6NC57 917 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 F8W031 263 aaPredicted RBP8.48□□□□□ -1.05
HDAC3-209ENST00000486618 H0YGN5 161 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 H7C1W4 665 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 TPD52L2O43399 206 aaKnown RBP8.48□□□□□ -1.05
HDAC3-209ENST00000486618 LILRA1O75019 489 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 BRD1O95696 1058 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 GNRH1P01148 92 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 IGKV5-2P06315 115 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 ITGA6P23229 1130 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 GTF2A2P52657 109 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 RBM5P52756 815 aaKnown RBP eCLIP8.48□□□□□ -1.05
HDAC3-209ENST00000486618 PRMT2P55345 433 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 RELBQ01201 579 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 CHRNDQ07001 517 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 RASA3Q14644 834 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 C15orf52Q6ZUT6 534 aaKnown RBP8.48□□□□□ -1.05
HDAC3-209ENST00000486618 ZNF804AQ7Z570 1209 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 OPTNQ96CV9 577 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 PRMT6Q96LA8 375 aaPredicted RBP8.48□□□□□ -1.05
HDAC3-209ENST00000486618 PLA2G12BQ9BX93 195 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 STK31Q9BXU1 1019 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 ELP3Q9H9T3 547 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 NAP1L2Q9ULW6 460 aaPredicted RBP8.48□□□□□ -1.05
HDAC3-209ENST00000486618 PTCH2Q9Y6C5 1203 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 SSC5DA1L4H1 1573 aa8.48□□□□□ -1.05
HDAC3-209ENST00000486618 CCL15-CCL14A0A0B4J2E2 113 aa8.47□□□□□ -1.05
HDAC3-209ENST00000486618 NEURL1BA8MQ27 555 aa8.47□□□□□ -1.05
HDAC3-209ENST00000486618 ADH1AP07327 375 aa8.47□□□□□ -1.05
HDAC3-209ENST00000486618 KLRK1P26718 216 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms