RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 ZBTB21Q9ULJ3 1066 aa9.78□□□□□ -0.84
SF3A1-208ENST00000485618 TRIM17Q9Y577 477 aa9.78□□□□□ -0.84
SF3A1-208ENST00000485618 SNCAIPQ9Y6H5 919 aa9.78□□□□□ -0.84
SF3A1-208ENST00000485618 FOCADQ5VW36 1801 aa9.77□□□□□ -0.84
SF3A1-208ENST00000485618 FAM196BA6NMK8 535 aa9.77□□□□□ -0.85
SF3A1-208ENST00000485618 USP17L10C9JJH3 530 aa9.77□□□□□ -0.85
SF3A1-208ENST00000485618 IGF2BP3O00425 579 aaKnown RBP eCLIP9.77□□□□□ -0.85
SF3A1-208ENST00000485618 ORC4O43929 436 aa9.77□□□□□ -0.85
SF3A1-208ENST00000485618 GDF11O95390 407 aa9.77□□□□□ -0.85
SF3A1-208ENST00000485618 TFAP4Q01664 338 aa9.77□□□□□ -0.85
SF3A1-208ENST00000485618 KRT32Q14532 448 aa9.77□□□□□ -0.85
SF3A1-208ENST00000485618 SART3Q15020 963 aaKnown RBP9.77□□□□□ -0.85
SF3A1-208ENST00000485618 RRP12Q5JTH9 1297 aaKnown RBP9.77□□□□□ -0.85
SF3A1-208ENST00000485618 SKAP1Q86WV1 359 aa9.77□□□□□ -0.85
SF3A1-208ENST00000485618 DYNLL2Q96FJ2 89 aa9.77□□□□□ -0.85
SF3A1-208ENST00000485618 SYNPO2Q9UMS6 1093 aa9.77□□□□□ -0.85
SF3A1-208ENST00000485618 LAMB1P07942 1786 aa9.77□□□□□ -0.85
SF3A1-208ENST00000485618 ROBO3Q96MS0 1386 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 CYP2D7A0A087X1C5 515 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 TRIM75PA6NK02 468 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 IRF6O14896 467 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 BACE1P56817 501 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 HAND2P61296 217 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 SPP2Q13103 211 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 USP17L2Q6R6M4 530 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 OTOP1Q7RTM1 612 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 RALYLQ86SE5 291 aaKnown RBP9.76□□□□□ -0.85
SF3A1-208ENST00000485618 STK11IPQ8N1F8 1099 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 PROCA1Q8NCQ7 364 aaPredicted RBP9.76□□□□□ -0.85
SF3A1-208ENST00000485618 NEDD1Q8NHV4 660 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 STAG1Q8WVM7 1258 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 ERO1AQ96HE7 468 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 TTC14Q96N46 770 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 UBAC1Q9BSL1 405 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 UPF2Q9HAU5 1272 aaKnown RBP9.76□□□□□ -0.85
SF3A1-208ENST00000485618 GOPCQ9HD26 462 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 PNMA3Q9UL41 463 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 KCNH4Q9UQ05 1017 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 AFG3L2Q9Y4W6 797 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 NAV1Q8NEY1 1877 aa9.76□□□□□ -0.85
SF3A1-208ENST00000485618 OTOFQ9HC10 1997 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 CDK5RAP2Q96SN8 1893 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 CCL15-CCL14A0A0B4J2E2 113 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 ERICH2A1L162 156 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 TESPA1A2RU30 521 aaPredicted RBP9.75□□□□□ -0.85
SF3A1-208ENST00000485618 TTLL1O95922 423 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 HMGB1P09429 215 aaKnown RBP9.75□□□□□ -0.85
SF3A1-208ENST00000485618 FGRP09769 529 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 RASA1P20936 1047 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 OSBPP22059 807 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 ATP2B2Q01814 1243 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 ICA1Q05084 483 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 CTDSPL2Q05D32 466 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 CRHR2Q13324 411 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 ARHGEF6Q15052 776 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 CCL15Q16663 113 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 SLC44A5Q8NCS7 719 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 NCOA7Q8NI08 942 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 CD99L2Q8TCZ2 262 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 LPAR1Q92633 364 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 KIAA1683Q9H0B3 1180 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 DNAJC18Q9H819 358 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 SLC45A1Q9Y2W3 748 aa9.75□□□□□ -0.85
SF3A1-208ENST00000485618 RBM8AQ9Y5S9 174 aaKnown RBP9.75□□□□□ -0.85
SF3A1-208ENST00000485618 BAZ2AQ9UIF9 1905 aaKnown RBP9.75□□□□□ -0.85
SF3A1-208ENST00000485618 A0A0G2JLL6 359 aaPredicted RBP9.74□□□□□ -0.85
SF3A1-208ENST00000485618 POTEFA5A3E0 1075 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 FOXP2O15409 715 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 PRDM1O75626 825 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 AKR1B1P15121 316 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 PTH1RQ03431 593 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 SEPT2Q15019 361 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 GADL1Q6ZQY3 521 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 PRRT2Q7Z6L0 340 aaPredicted RBP9.74□□□□□ -0.85
SF3A1-208ENST00000485618 ANKRD23Q86SG2 305 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 TMTC2Q8N394 836 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 LSG1Q9H089 658 aaKnown RBP9.74□□□□□ -0.85
SF3A1-208ENST00000485618 ZFYVE28Q9HCC9 887 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 TCP11L1Q9NUJ3 509 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 NYAP2Q9P242 653 aa9.74□□□□□ -0.85
SF3A1-208ENST00000485618 RBBP6Q7Z6E9 1792 aaKnown RBP9.73□□□□□ -0.85
SF3A1-208ENST00000485618 CYP21A2P08686 494 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 PSMA5P28066 241 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 GJA5P36382 358 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 MTMR2Q13614 643 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 SH3D19Q5HYK7 790 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 FAM47AQ5JRC9 791 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 CREB3L3Q68CJ9 461 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 DGKHQ86XP1 1220 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 GTF3C2Q8WUA4 911 aaPredicted RBP9.73□□□□□ -0.85
SF3A1-208ENST00000485618 MS4A4AQ96JQ5 239 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 PARK7Q99497 189 aaKnown RBP9.73□□□□□ -0.85
SF3A1-208ENST00000485618 MTA3Q9BTC8 594 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 MTMR4Q9NYA4 1195 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 HOXC10Q9NYD6 342 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 CLIP2Q9UDT6 1046 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 STX8Q9UNK0 236 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 PTPN22Q9Y2R2 807 aa9.73□□□□□ -0.85
SF3A1-208ENST00000485618 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.73□□□□□ -0.85
SF3A1-208ENST00000485618 TMX2Q9Y320 296 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms