RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 TMOD4Q9NZQ9 345 aa21.5■■□□□ 1.03
HDAC6-225ENST00000483506 PNMA3Q9UL41 463 aa21.5■■□□□ 1.03
HDAC6-225ENST00000483506 ZMYM6O95789 1325 aa21.5■■□□□ 1.03
HDAC6-225ENST00000483506 MINDY4BA8MYZ0 360 aa21.49■■□□□ 1.03
HDAC6-225ENST00000483506 USP14P54578 494 aa21.49■■□□□ 1.03
HDAC6-225ENST00000483506 VPS53Q5VIR6 699 aa21.49■■□□□ 1.03
HDAC6-225ENST00000483506 ZNF589Q86UQ0 364 aaPredicted RBP21.49■■□□□ 1.03
HDAC6-225ENST00000483506 EMILIN3Q9NT22 766 aa21.49■■□□□ 1.03
HDAC6-225ENST00000483506 CCDC171Q6TFL3 1326 aa21.49■■□□□ 1.03
HDAC6-225ENST00000483506 MPHOSPH10O00566 681 aaKnown RBP21.48■■□□□ 1.03
HDAC6-225ENST00000483506 RASA1P20936 1047 aa21.48■■□□□ 1.03
HDAC6-225ENST00000483506 CAP1Q01518 475 aa21.48■■□□□ 1.03
HDAC6-225ENST00000483506 CD99L2Q8TCZ2 262 aa21.48■■□□□ 1.03
HDAC6-225ENST00000483506 ACER1Q8TDN7 264 aa21.48■■□□□ 1.03
HDAC6-225ENST00000483506 LACTBP83111 547 aaPredicted RBP21.47■■□□□ 1.03
HDAC6-225ENST00000483506 PPARAQ07869 468 aa21.47■■□□□ 1.03
HDAC6-225ENST00000483506 IFFO2Q5TF58 517 aa21.47■■□□□ 1.03
HDAC6-225ENST00000483506 ABHD8Q96I13 439 aa21.47■■□□□ 1.03
HDAC6-225ENST00000483506 ZNF287Q9HBT7 754 aa21.47■■□□□ 1.03
HDAC6-225ENST00000483506 CPA4Q9UI42 421 aa21.47■■□□□ 1.03
HDAC6-225ENST00000483506 HTTP42858 3142 aa21.47■■□□□ 1.03
HDAC6-225ENST00000483506 A0A1W2PRG0 241 aa21.46■■□□□ 1.03
HDAC6-225ENST00000483506 HSPD1P10809 573 aaKnown RBP21.46■■□□□ 1.03
HDAC6-225ENST00000483506 MFAP1P55081 439 aaKnown RBP21.46■■□□□ 1.03
HDAC6-225ENST00000483506 OTOP1Q7RTM1 612 aa21.46■■□□□ 1.03
HDAC6-225ENST00000483506 SIAH1Q8IUQ4 282 aa21.46■■□□□ 1.03
HDAC6-225ENST00000483506 FEZ1Q99689 392 aa21.46■■□□□ 1.03
HDAC6-225ENST00000483506 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.46■■□□□ 1.03
HDAC6-225ENST00000483506 ASCC2Q9H1I8 757 aaPredicted RBP21.46■■□□□ 1.03
HDAC6-225ENST00000483506 DIAPH3Q9NSV4 1193 aa21.46■■□□□ 1.03
HDAC6-225ENST00000483506 ANAPC4Q9UJX5 808 aa21.46■■□□□ 1.03
HDAC6-225ENST00000483506 OSBPP22059 807 aa21.45■■□□□ 1.02
HDAC6-225ENST00000483506 ICA1Q05084 483 aa21.45■■□□□ 1.02
HDAC6-225ENST00000483506 ARHGEF6Q15052 776 aa21.45■■□□□ 1.02
HDAC6-225ENST00000483506 SMCR8Q8TEV9 937 aaPredicted RBP21.45■■□□□ 1.02
HDAC6-225ENST00000483506 KANSL2Q9H9L4 492 aa21.45■■□□□ 1.02
HDAC6-225ENST00000483506 MKNK2Q9HBH9 465 aa21.45■■□□□ 1.02
HDAC6-225ENST00000483506 ZSWIM8A7E2V4 1837 aa21.45■■□□□ 1.02
HDAC6-225ENST00000483506 PLIN4Q96Q06 1357 aa21.45■■□□□ 1.02
HDAC6-225ENST00000483506 GNRH1P01148 92 aa21.44■■□□□ 1.02
HDAC6-225ENST00000483506 SLC3A2P08195 630 aaKnown RBP21.44■■□□□ 1.02
HDAC6-225ENST00000483506 GCLCP48506 637 aaPredicted RBP21.44■■□□□ 1.02
HDAC6-225ENST00000483506 PDE4BQ07343 736 aa21.44■■□□□ 1.02
HDAC6-225ENST00000483506 FBXO46Q6PJ61 603 aaPredicted RBP21.44■■□□□ 1.02
HDAC6-225ENST00000483506 CWC27Q6UX04 472 aaKnown RBP21.44■■□□□ 1.02
HDAC6-225ENST00000483506 EFCC1Q9HA90 598 aa21.44■■□□□ 1.02
HDAC6-225ENST00000483506 TMX2Q9Y320 296 aa21.44■■□□□ 1.02
HDAC6-225ENST00000483506 TRIM17Q9Y577 477 aa21.44■■□□□ 1.02
HDAC6-225ENST00000483506 MGAMO43451 1857 aa21.43■■□□□ 1.02
HDAC6-225ENST00000483506 IGKV6D-41A0A0C4DH26 115 aa21.43■■□□□ 1.02
HDAC6-225ENST00000483506 FGAP02671 866 aa21.43■■□□□ 1.02
HDAC6-225ENST00000483506 CENPBP07199 599 aaPredicted RBP21.43■■□□□ 1.02
HDAC6-225ENST00000483506 FGRP09769 529 aa21.43■■□□□ 1.02
HDAC6-225ENST00000483506 VCAM1P19320 739 aa21.43■■□□□ 1.02
HDAC6-225ENST00000483506 KIF22Q14807 665 aa21.43■■□□□ 1.02
HDAC6-225ENST00000483506 FAM110CQ1W6H9 321 aa21.43■■□□□ 1.02
HDAC6-225ENST00000483506 SH2D4AQ9H788 454 aa21.43■■□□□ 1.02
HDAC6-225ENST00000483506 ARHGEF10LQ9HCE6 1279 aa21.43■■□□□ 1.02
HDAC6-225ENST00000483506 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.43■■□□□ 1.02
HDAC6-225ENST00000483506 NEFLP07196 543 aa21.42■■□□□ 1.02
HDAC6-225ENST00000483506 CTGFP29279 349 aa21.42■■□□□ 1.02
HDAC6-225ENST00000483506 IRX3P78415 501 aaPredicted RBP21.42■■□□□ 1.02
HDAC6-225ENST00000483506 LAMA4Q16363 1823 aa21.42■■□□□ 1.02
HDAC6-225ENST00000483506 CLEC10AQ8IUN9 316 aa21.42■■□□□ 1.02
HDAC6-225ENST00000483506 RAD50Q92878 1312 aa21.42■■□□□ 1.02
HDAC6-225ENST00000483506 ARHGAP39Q9C0H5 1083 aa21.42■■□□□ 1.02
HDAC6-225ENST00000483506 USP17L15C9J2P7 530 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 USP17L13C9JLJ4 530 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 USP17L11C9JVI0 530 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 USP17L18D6R9N7 530 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 USP17L22D6RA61 530 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 USP17L17D6RBQ6 530 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 USP17L19D6RCP7 530 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 USP17L20D6RJB6 530 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 USP17L24Q0WX57 530 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 ZYXQ15942 572 aaKnown RBP21.41■■□□□ 1.02
HDAC6-225ENST00000483506 ZNF444Q8N0Y2 327 aaPredicted RBP21.41■■□□□ 1.02
HDAC6-225ENST00000483506 GTF3C2Q8WUA4 911 aaPredicted RBP21.41■■□□□ 1.02
HDAC6-225ENST00000483506 LPAR1Q92633 364 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 P2RX7Q99572 595 aaKnown RBP21.41■■□□□ 1.02
HDAC6-225ENST00000483506 MORF4L1Q9UBU8 362 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 PTPN22Q9Y2R2 807 aa21.41■■□□□ 1.02
HDAC6-225ENST00000483506 PRDM1O75626 825 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 EEF2P13639 858 aaKnown RBP21.4■■□□□ 1.02
HDAC6-225ENST00000483506 HERVK_113P62684 666 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 CATSPERGQ6ZRH7 1159 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 STK11IPQ8N1F8 1099 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 ANKRD13CQ8N6S4 541 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 NEDD1Q8NHV4 660 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 CCDC136Q96JN2 1154 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 TRIM47Q96LD4 638 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 DSCC1Q9BVC3 393 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 VCPKMTQ9H867 229 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 NYAP2Q9P242 653 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 HPS5Q9UPZ3 1129 aa21.4■■□□□ 1.02
HDAC6-225ENST00000483506 RLFQ13129 1914 aa21.39■■□□□ 1.02
HDAC6-225ENST00000483506 ORC4O43929 436 aa21.39■■□□□ 1.01
HDAC6-225ENST00000483506 CHMLP26374 656 aa21.39■■□□□ 1.01
HDAC6-225ENST00000483506 PSMC4P43686 418 aa21.39■■□□□ 1.01
HDAC6-225ENST00000483506 PRMT2P55345 433 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms