RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 ERVK-9P63128 1117 aa18.44■□□□□ 0.54
LIMS3-203ENST00000480744 ERVK-24P63145 666 aa18.44■□□□□ 0.54
LIMS3-203ENST00000480744 EVX2Q03828 476 aa18.44■□□□□ 0.54
LIMS3-203ENST00000480744 TRIM32Q13049 653 aa18.44■□□□□ 0.54
LIMS3-203ENST00000480744 PDE3AQ14432 1141 aa18.44■□□□□ 0.54
LIMS3-203ENST00000480744 ACER1Q8TDN7 264 aa18.44■□□□□ 0.54
LIMS3-203ENST00000480744 GTF3C2Q8WUA4 911 aaPredicted RBP18.44■□□□□ 0.54
LIMS3-203ENST00000480744 NUDT12Q9BQG2 462 aa18.44■□□□□ 0.54
LIMS3-203ENST00000480744 ARMT1Q9H993 441 aa18.44■□□□□ 0.54
LIMS3-203ENST00000480744 USP17L15C9J2P7 530 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 USP17L13C9JLJ4 530 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 USP17L11C9JVI0 530 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 USP17L18D6R9N7 530 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 USP17L22D6RA61 530 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 USP17L17D6RBQ6 530 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 USP17L19D6RCP7 530 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 USP17L20D6RJB6 530 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 MAPK4P31152 587 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 USP14P54578 494 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 USP17L24Q0WX57 530 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 Q3C1V9 767 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 SLFNL1Q499Z3 407 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 C12orf42Q96LP6 360 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 ALPK3Q96L96 1907 aa18.43■□□□□ 0.54
LIMS3-203ENST00000480744 SMARCA5O60264 1052 aaPredicted RBP18.42■□□□□ 0.54
LIMS3-203ENST00000480744 MBD4O95243 580 aa18.42■□□□□ 0.54
LIMS3-203ENST00000480744 CYP2D6P10635 497 aa18.42■□□□□ 0.54
LIMS3-203ENST00000480744 ATP5JP18859 108 aa18.42■□□□□ 0.54
LIMS3-203ENST00000480744 VCAM1P19320 739 aa18.42■□□□□ 0.54
LIMS3-203ENST00000480744 SEPT2Q15019 361 aa18.42■□□□□ 0.54
LIMS3-203ENST00000480744 CHRDL2Q6WN34 429 aa18.42■□□□□ 0.54
LIMS3-203ENST00000480744 SOCS4Q8WXH5 440 aa18.42■□□□□ 0.54
LIMS3-203ENST00000480744 TRIB2Q92519 343 aa18.42■□□□□ 0.54
LIMS3-203ENST00000480744 LRRCC1Q9C099 1032 aa18.42■□□□□ 0.54
LIMS3-203ENST00000480744 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.42■□□□□ 0.54
LIMS3-203ENST00000480744 KIAA1683Q9H0B3 1180 aa18.42■□□□□ 0.54
LIMS3-203ENST00000480744 PORCNQ9H237 461 aa18.42■□□□□ 0.54
LIMS3-203ENST00000480744 HMX1Q9NP08 348 aaPredicted RBP18.42■□□□□ 0.54
LIMS3-203ENST00000480744 DCP1AQ9NPI6 582 aaPredicted RBP18.42■□□□□ 0.54
LIMS3-203ENST00000480744 PRKAB2O43741 272 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 GUCY1A2P33402 732 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 ADD2P35612 726 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 GABPAQ06546 454 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 WDR78Q5VTH9 848 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 GPR142Q7Z601 462 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 HAUS7Q99871 368 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 CRISPLD2Q9H0B8 497 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 PCDH10Q9P2E7 1040 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 NR2E3Q9Y5X4 410 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 TRIOBPQ9H2D6 2365 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 RPTORQ8N122 1335 aa18.41■□□□□ 0.54
LIMS3-203ENST00000480744 ZKSCAN1P17029 563 aaPredicted RBP18.4■□□□□ 0.54
LIMS3-203ENST00000480744 POTEEQ6S8J3 1075 aa18.4■□□□□ 0.54
LIMS3-203ENST00000480744 CATSPERGQ6ZRH7 1159 aa18.4■□□□□ 0.54
LIMS3-203ENST00000480744 PLEKHH3Q7Z736 793 aa18.4■□□□□ 0.54
LIMS3-203ENST00000480744 SLC44A5Q8NCS7 719 aa18.4■□□□□ 0.54
LIMS3-203ENST00000480744 PAWRQ96IZ0 340 aaKnown RBP18.4■□□□□ 0.54
LIMS3-203ENST00000480744 RPAP3Q9H6T3 665 aaPredicted RBP18.4■□□□□ 0.54
LIMS3-203ENST00000480744 RABGAP1Q9Y3P9 1069 aa18.4■□□□□ 0.54
LIMS3-203ENST00000480744 CHGBP05060 677 aa18.39■□□□□ 0.53
LIMS3-203ENST00000480744 PRKAR2AP13861 404 aaKnown RBP18.39■□□□□ 0.53
LIMS3-203ENST00000480744 CAPN2P17655 700 aa18.39■□□□□ 0.53
LIMS3-203ENST00000480744 RGS2P41220 211 aa18.39■□□□□ 0.53
LIMS3-203ENST00000480744 CCNA1P78396 465 aa18.39■□□□□ 0.53
LIMS3-203ENST00000480744 DIS3LQ8TF46 1054 aaKnown RBP18.39■□□□□ 0.53
LIMS3-203ENST00000480744 DYNLL2Q96FJ2 89 aa18.39■□□□□ 0.53
LIMS3-203ENST00000480744 EVI5O60447 810 aa18.38■□□□□ 0.53
LIMS3-203ENST00000480744 CNMDO75829 334 aa18.38■□□□□ 0.53
LIMS3-203ENST00000480744 XRCC5P13010 732 aaKnown RBP18.38■□□□□ 0.53
LIMS3-203ENST00000480744 FXR1P51114 621 aaKnown RBP eCLIP18.38■□□□□ 0.53
LIMS3-203ENST00000480744 NECAB2Q7Z6G3 386 aa18.38■□□□□ 0.53
LIMS3-203ENST00000480744 AMOTL1Q8IY63 956 aa18.38■□□□□ 0.53
LIMS3-203ENST00000480744 ATP8A2Q9NTI2 1148 aa18.38■□□□□ 0.53
LIMS3-203ENST00000480744 SWAP70Q9UH65 585 aa18.38■□□□□ 0.53
LIMS3-203ENST00000480744 CYP2D7A0A087X1C5 515 aa18.37■□□□□ 0.53
LIMS3-203ENST00000480744 GLRX3O76003 335 aaKnown RBP18.37■□□□□ 0.53
LIMS3-203ENST00000480744 CCL14Q16627 93 aa18.37■□□□□ 0.53
LIMS3-203ENST00000480744 MORN1Q5T089 497 aa18.37■□□□□ 0.53
LIMS3-203ENST00000480744 ZSCAN25Q6NSZ9 544 aa18.37■□□□□ 0.53
LIMS3-203ENST00000480744 TMEM179Q6ZVK1 233 aa18.37■□□□□ 0.53
LIMS3-203ENST00000480744 TRMT44Q8IYL2 757 aaKnown RBP18.37■□□□□ 0.53
LIMS3-203ENST00000480744 DDRGK1Q96HY6 314 aa18.37■□□□□ 0.53
LIMS3-203ENST00000480744 APBA2Q99767 749 aa18.37■□□□□ 0.53
LIMS3-203ENST00000480744 TANGO6Q9C0B7 1094 aa18.37■□□□□ 0.53
LIMS3-203ENST00000480744 FRMPD3Q5JV73 1810 aa18.37■□□□□ 0.53
LIMS3-203ENST00000480744 A0A1W2PRG0 241 aa18.36■□□□□ 0.53
LIMS3-203ENST00000480744 SPDYE16A6NNV3 312 aaPredicted RBP18.36■□□□□ 0.53
LIMS3-203ENST00000480744 AKR1B1P15121 316 aa18.36■□□□□ 0.53
LIMS3-203ENST00000480744 UBE3CQ15386 1083 aa18.36■□□□□ 0.53
LIMS3-203ENST00000480744 CLEC10AQ8IUN9 316 aa18.36■□□□□ 0.53
LIMS3-203ENST00000480744 ANKLE1Q8NAG6 615 aa18.36■□□□□ 0.53
LIMS3-203ENST00000480744 USP6NLQ92738 828 aa18.36■□□□□ 0.53
LIMS3-203ENST00000480744 BTBD7Q9P203 1132 aa18.36■□□□□ 0.53
LIMS3-203ENST00000480744 SLC4A4Q9Y6R1 1079 aa18.36■□□□□ 0.53
LIMS3-203ENST00000480744 RLFQ13129 1914 aa18.35■□□□□ 0.53
LIMS3-203ENST00000480744 CACNB2Q08289 660 aaPredicted RBP18.35■□□□□ 0.53
LIMS3-203ENST00000480744 MAP2K5Q13163 448 aa18.35■□□□□ 0.53
LIMS3-203ENST00000480744 MAP3K21Q5TCX8 1036 aa18.35■□□□□ 0.53
LIMS3-203ENST00000480744 ARHGEF10LQ9HCE6 1279 aa18.35■□□□□ 0.53
LIMS3-203ENST00000480744 ECHDC1Q9NTX5 307 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms