RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 GJA8P48165 433 aa13.75□□□□□ -0.21
CCM2-213ENST00000480658 PLCD1P51178 756 aa13.75□□□□□ -0.21
CCM2-213ENST00000480658 RRP1BQ14684 758 aaKnown RBP13.75□□□□□ -0.21
CCM2-213ENST00000480658 LBX2Q6XYB7 198 aa13.75□□□□□ -0.21
CCM2-213ENST00000480658 SDR42E1Q8WUS8 393 aa13.75□□□□□ -0.21
CCM2-213ENST00000480658 RABGAP1Q9Y3P9 1069 aa13.75□□□□□ -0.21
CCM2-213ENST00000480658 MYH7P12883 1935 aa13.74□□□□□ -0.21
CCM2-213ENST00000480658 HMGCRP04035 888 aa13.74□□□□□ -0.21
CCM2-213ENST00000480658 XRCC5P13010 732 aaKnown RBP13.74□□□□□ -0.21
CCM2-213ENST00000480658 CTGFP29279 349 aa13.74□□□□□ -0.21
CCM2-213ENST00000480658 MB21D1Q8N884 522 aa13.74□□□□□ -0.21
CCM2-213ENST00000480658 APPBP2Q92624 585 aa13.74□□□□□ -0.21
CCM2-213ENST00000480658 NUDT12Q9BQG2 462 aa13.74□□□□□ -0.21
CCM2-213ENST00000480658 HTATIP2Q9BUP3 242 aa13.74□□□□□ -0.21
CCM2-213ENST00000480658 RNF208Q9H0X6 261 aa13.74□□□□□ -0.21
CCM2-213ENST00000480658 ARMT1Q9H993 441 aa13.74□□□□□ -0.21
CCM2-213ENST00000480658 SLC4A4Q9Y6R1 1079 aa13.74□□□□□ -0.21
CCM2-213ENST00000480658 CCL5P13501 91 aa13.73□□□□□ -0.21
CCM2-213ENST00000480658 VCAM1P19320 739 aa13.73□□□□□ -0.21
CCM2-213ENST00000480658 EN2P19622 333 aaPredicted RBP13.73□□□□□ -0.21
CCM2-213ENST00000480658 ERVK-9P63128 1117 aa13.73□□□□□ -0.21
CCM2-213ENST00000480658 ERVK-24P63145 666 aa13.73□□□□□ -0.21
CCM2-213ENST00000480658 C12orf60Q5U649 245 aa13.73□□□□□ -0.21
CCM2-213ENST00000480658 NACAP1Q9BZK3 213 aa13.73□□□□□ -0.21
CCM2-213ENST00000480658 EMILIN3Q9NT22 766 aa13.73□□□□□ -0.21
CCM2-213ENST00000480658 HOXC10Q9NYD6 342 aa13.73□□□□□ -0.21
CCM2-213ENST00000480658 ZSWIM8A7E2V4 1837 aa13.73□□□□□ -0.21
CCM2-213ENST00000480658 TNRC18O15417 2968 aaPredicted RBP13.72□□□□□ -0.21
CCM2-213ENST00000480658 RNF113AO15541 343 aaKnown RBP13.72□□□□□ -0.21
CCM2-213ENST00000480658 INHAP05111 366 aa13.72□□□□□ -0.21
CCM2-213ENST00000480658 SLC3A2P08195 630 aaKnown RBP13.72□□□□□ -0.21
CCM2-213ENST00000480658 MX1P20591 662 aa13.72□□□□□ -0.21
CCM2-213ENST00000480658 RGS2P41220 211 aa13.72□□□□□ -0.21
CCM2-213ENST00000480658 ICA1Q05084 483 aa13.72□□□□□ -0.21
CCM2-213ENST00000480658 HDAC1Q13547 482 aaPredicted RBP13.72□□□□□ -0.21
CCM2-213ENST00000480658 PPP4R3BQ5MIZ7 849 aa13.72□□□□□ -0.21
CCM2-213ENST00000480658 C16orf86Q6ZW13 317 aa13.72□□□□□ -0.21
CCM2-213ENST00000480658 P2RX7Q99572 595 aaKnown RBP13.72□□□□□ -0.21
CCM2-213ENST00000480658 KANSL2Q9H9L4 492 aa13.72□□□□□ -0.21
CCM2-213ENST00000480658 IVNS1ABPQ9Y6Y0 642 aa13.72□□□□□ -0.21
CCM2-213ENST00000480658 SMARCA5O60264 1052 aaPredicted RBP13.71□□□□□ -0.21
CCM2-213ENST00000480658 SBK1Q52WX2 424 aa13.71□□□□□ -0.21
CCM2-213ENST00000480658 CATSPERGQ6ZRH7 1159 aa13.71□□□□□ -0.21
CCM2-213ENST00000480658 ANKLE1Q8NAG6 615 aa13.71□□□□□ -0.21
CCM2-213ENST00000480658 U2AF1L4Q8WU68 220 aaKnown RBP13.71□□□□□ -0.21
CCM2-213ENST00000480658 EDC3Q96F86 508 aaKnown RBP13.71□□□□□ -0.21
CCM2-213ENST00000480658 GOPCQ9HD26 462 aa13.71□□□□□ -0.21
CCM2-213ENST00000480658 SLC5A4Q9NY91 659 aa13.71□□□□□ -0.21
CCM2-213ENST00000480658 SYNPO2Q9UMS6 1093 aa13.71□□□□□ -0.21
CCM2-213ENST00000480658 GABRQQ9UN88 632 aa13.71□□□□□ -0.21
CCM2-213ENST00000480658 CENPFP49454 3210 aa13.71□□□□□ -0.22
CCM2-213ENST00000480658 ROBO3Q96MS0 1386 aa13.71□□□□□ -0.22
CCM2-213ENST00000480658 MYH8P13535 1937 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 RPTORQ8N122 1335 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 USP17L12C9JPN9 530 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 USP17L21D6R901 530 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 WDR46O15213 610 aaKnown RBP13.7□□□□□ -0.22
CCM2-213ENST00000480658 ECM2O94769 699 aaPredicted RBP13.7□□□□□ -0.22
CCM2-213ENST00000480658 SGPL1O95470 568 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 COPB2P35606 906 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 JAG1P78504 1218 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 COG2Q14746 738 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 PLEKHH3Q7Z736 793 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 APBA2Q99767 749 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 PAGR1Q9BTK6 254 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 TANGO6Q9C0B7 1094 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 PUS7LQ9H0K6 701 aaKnown RBP13.7□□□□□ -0.22
CCM2-213ENST00000480658 RPAP3Q9H6T3 665 aaPredicted RBP13.7□□□□□ -0.22
CCM2-213ENST00000480658 HMX1Q9NP08 348 aaPredicted RBP13.7□□□□□ -0.22
CCM2-213ENST00000480658 PAK6Q9NQU5 681 aaPredicted RBP13.7□□□□□ -0.22
CCM2-213ENST00000480658 TMX2Q9Y320 296 aa13.7□□□□□ -0.22
CCM2-213ENST00000480658 STRNO43815 780 aa13.69□□□□□ -0.22
CCM2-213ENST00000480658 ZKSCAN1P17029 563 aaPredicted RBP13.69□□□□□ -0.22
CCM2-213ENST00000480658 TDO2P48775 406 aa13.69□□□□□ -0.22
CCM2-213ENST00000480658 CDK8P49336 464 aa13.69□□□□□ -0.22
CCM2-213ENST00000480658 SEPT2Q15019 361 aa13.69□□□□□ -0.22
CCM2-213ENST00000480658 MTFR1Q15390 333 aa13.69□□□□□ -0.22
CCM2-213ENST00000480658 ZYXQ15942 572 aaKnown RBP13.69□□□□□ -0.22
CCM2-213ENST00000480658 GPR142Q7Z601 462 aa13.69□□□□□ -0.22
CCM2-213ENST00000480658 STRBPQ96SI9 672 aaKnown RBP13.69□□□□□ -0.22
CCM2-213ENST00000480658 FSD1Q9BTV5 496 aa13.69□□□□□ -0.22
CCM2-213ENST00000480658 MKNK2Q9HBH9 465 aa13.69□□□□□ -0.22
CCM2-213ENST00000480658 RBPJLQ9UBG7 517 aa13.69□□□□□ -0.22
CCM2-213ENST00000480658 SLC15A5A6NIM6 579 aa13.68□□□□□ -0.22
CCM2-213ENST00000480658 GPAA1O43292 621 aa13.68□□□□□ -0.22
CCM2-213ENST00000480658 FARP2O94887 1054 aaPredicted RBP13.68□□□□□ -0.22
CCM2-213ENST00000480658 MYCP01106 439 aaPredicted RBP13.68□□□□□ -0.22
CCM2-213ENST00000480658 ELNP15502 786 aa13.68□□□□□ -0.22
CCM2-213ENST00000480658 PDE4BQ07343 736 aa13.68□□□□□ -0.22
CCM2-213ENST00000480658 CTR9Q6PD62 1173 aa13.68□□□□□ -0.22
CCM2-213ENST00000480658 SHCBP1Q8NEM2 672 aa13.68□□□□□ -0.22
CCM2-213ENST00000480658 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.68□□□□□ -0.22
CCM2-213ENST00000480658 RWDD1Q9H446 243 aaPredicted RBP13.68□□□□□ -0.22
CCM2-213ENST00000480658 VCPKMTQ9H867 229 aa13.68□□□□□ -0.22
CCM2-213ENST00000480658 GJD2Q9UKL4 321 aa13.68□□□□□ -0.22
CCM2-213ENST00000480658 PCDHB15Q9Y5E8 787 aa13.68□□□□□ -0.22
CCM2-213ENST00000480658 NR2E3Q9Y5X4 410 aa13.68□□□□□ -0.22
CCM2-213ENST00000480658 PDE4DIPQ5VU43 2346 aa13.68□□□□□ -0.22
CCM2-213ENST00000480658 BRCA2P51587 3418 aa13.67□□□□□ -0.22
CCM2-213ENST00000480658 SPDYE16A6NNV3 312 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms