RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PICK1Q9NRD5 415 aa7.31□□□□□ -1.24
UPF3B-203ENST00000478840 SUSD2Q9UGT4 822 aa7.31□□□□□ -1.24
UPF3B-203ENST00000478840 FAM181BA6NEQ2 426 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 NEFMP07197 916 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 SLBPQ14493 270 aaKnown RBP eCLIP7.3□□□□□ -1.24
UPF3B-203ENST00000478840 NKG7Q16617 165 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 KIAA1211Q6ZU35 1233 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 PPFIBP1Q86W92 1011 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 CYB5D2Q8WUJ1 264 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 KISS1RQ969F8 398 aaPredicted RBP7.3□□□□□ -1.24
UPF3B-203ENST00000478840 SLC6A18Q96N87 628 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 KIF2CQ99661 725 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 RUSC1Q9BVN2 902 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 RNF208Q9H0X6 261 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 CYP4F12Q9HCS2 524 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 CD2APQ9Y5K6 639 aa7.3□□□□□ -1.24
UPF3B-203ENST00000478840 A0A0A0MRY4 1105 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 ANKRD34BA5PLL1 514 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 AGRPO00253 132 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 WISP1O95388 367 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 TIAF1O95411 115 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 CST3P01034 146 aaPredicted RBP7.29□□□□□ -1.24
UPF3B-203ENST00000478840 CAPNS1P04632 268 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 CELA2BP08218 269 aaPredicted RBP7.29□□□□□ -1.24
UPF3B-203ENST00000478840 ADH5P11766 374 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 AMPD1P23109 780 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 SOX4Q06945 474 aaPredicted RBP7.29□□□□□ -1.24
UPF3B-203ENST00000478840 AKAP4Q5JQC9 854 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 NUTM2GQ5VZR2 741 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 PHACTR4Q8IZ21 702 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 NINJ1Q92982 152 aa7.29□□□□□ -1.24
UPF3B-203ENST00000478840 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.29□□□□□ -1.24
UPF3B-203ENST00000478840 A0A1W2PQU0 124 aa7.28□□□□□ -1.24
UPF3B-203ENST00000478840 FAM86C2PA6NEL3 165 aa7.28□□□□□ -1.24
UPF3B-203ENST00000478840 RAC1P63000 192 aa7.28□□□□□ -1.24
UPF3B-203ENST00000478840 TTLL4Q14679 1199 aa7.28□□□□□ -1.24
UPF3B-203ENST00000478840 TM4SF20Q53R12 229 aa7.28□□□□□ -1.24
UPF3B-203ENST00000478840 ANKRD39Q53RE8 183 aa7.28□□□□□ -1.24
UPF3B-203ENST00000478840 TRAPPC3LQ5T215 181 aa7.28□□□□□ -1.24
UPF3B-203ENST00000478840 LYPD4Q6UWN0 246 aa7.28□□□□□ -1.24
UPF3B-203ENST00000478840 ZNF513Q8N8E2 541 aaPredicted RBP7.28□□□□□ -1.24
UPF3B-203ENST00000478840 APBA2Q99767 749 aa7.28□□□□□ -1.24
UPF3B-203ENST00000478840 HAUS7Q99871 368 aa7.28□□□□□ -1.24
UPF3B-203ENST00000478840 ARHGEF4Q9NR80 690 aa7.28□□□□□ -1.24
UPF3B-203ENST00000478840 CLEC3AO75596 197 aa7.27□□□□□ -1.25
UPF3B-203ENST00000478840 GBP1P32455 592 aa7.27□□□□□ -1.25
UPF3B-203ENST00000478840 PRAMEF13Q5VWM6 474 aa7.27□□□□□ -1.25
UPF3B-203ENST00000478840 ZNF385CQ66K41 422 aaPredicted RBP7.27□□□□□ -1.25
UPF3B-203ENST00000478840 CDC37L1Q7L3B6 337 aa7.27□□□□□ -1.25
UPF3B-203ENST00000478840 ISL2Q96A47 359 aa7.27□□□□□ -1.25
UPF3B-203ENST00000478840 MFSD3Q96ES6 412 aa7.27□□□□□ -1.25
UPF3B-203ENST00000478840 KLHL25Q9H0H3 589 aa7.27□□□□□ -1.25
UPF3B-203ENST00000478840 TYW1Q9NV66 732 aaKnown RBP7.27□□□□□ -1.25
UPF3B-203ENST00000478840 C9IYK1 514 aa7.26□□□□□ -1.25
UPF3B-203ENST00000478840 PLD2O14939 933 aa7.26□□□□□ -1.25
UPF3B-203ENST00000478840 CBFA2T2O43439 604 aa7.26□□□□□ -1.25
UPF3B-203ENST00000478840 FNDC3BQ53EP0 1204 aaKnown RBP7.26□□□□□ -1.25
UPF3B-203ENST00000478840 FOXB2Q5VYV0 432 aa7.26□□□□□ -1.25
UPF3B-203ENST00000478840 IGF2-ASQ6U949 168 aa7.26□□□□□ -1.25
UPF3B-203ENST00000478840 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.26□□□□□ -1.25
UPF3B-203ENST00000478840 UBE3DQ7Z6J8 389 aa7.26□□□□□ -1.25
UPF3B-203ENST00000478840 BAHD1Q8TBE0 780 aaPredicted RBP7.26□□□□□ -1.25
UPF3B-203ENST00000478840 PPP1R13LQ8WUF5 828 aa7.26□□□□□ -1.25
UPF3B-203ENST00000478840 EXOC2Q96KP1 924 aa7.26□□□□□ -1.25
UPF3B-203ENST00000478840 DHRS4Q9BTZ2 278 aa7.26□□□□□ -1.25
UPF3B-203ENST00000478840 FOXQ1Q9C009 403 aa7.26□□□□□ -1.25
UPF3B-203ENST00000478840 MRPL18Q9H0U6 180 aaKnown RBP7.26□□□□□ -1.25
UPF3B-203ENST00000478840 NCOA5Q9HCD5 579 aaKnown RBP7.26□□□□□ -1.25
UPF3B-203ENST00000478840 CWC22Q9HCG8 908 aaKnown RBP7.26□□□□□ -1.25
UPF3B-203ENST00000478840 AP4E1Q9UPM8 1137 aa7.26□□□□□ -1.25
UPF3B-203ENST00000478840 COL17A1Q9UMD9 1497 aaPredicted RBP7.25□□□□□ -1.25
UPF3B-203ENST00000478840 EPHX1P07099 455 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 HCLS1P14317 486 aaPredicted RBP7.25□□□□□ -1.25
UPF3B-203ENST00000478840 PABPC4Q13310 644 aaKnown RBP eCLIP7.25□□□□□ -1.25
UPF3B-203ENST00000478840 HSP90AA2PQ14568 343 aaPredicted RBP7.25□□□□□ -1.25
UPF3B-203ENST00000478840 SV2CQ496J9 727 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 AXDND1Q5T1B0 1012 aaPredicted RBP7.25□□□□□ -1.25
UPF3B-203ENST00000478840 TDRD10Q5VZ19 366 aaKnown RBP7.25□□□□□ -1.25
UPF3B-203ENST00000478840 HEATR6Q6AI08 1181 aaKnown RBP7.25□□□□□ -1.25
UPF3B-203ENST00000478840 LINC00114Q6XXX2 140 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 ACAD11Q709F0 780 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 THNSL2Q86YJ6 484 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 SCUBE1Q8IWY4 988 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 NIM1KQ8IY84 436 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 TMEM130Q8N3G9 435 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 MFSD2AQ8NA29 543 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 STAG1Q8WVM7 1258 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 VWCEQ96DN2 955 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 TRIM11Q96F44 468 aa7.25□□□□□ -1.25
UPF3B-203ENST00000478840 DPH2Q9BQC3 489 aaPredicted RBP7.25□□□□□ -1.25
UPF3B-203ENST00000478840 DDX56Q9NY93 547 aaKnown RBP7.25□□□□□ -1.25
UPF3B-203ENST00000478840 TRAV20A0A0B4J274 112 aa7.24□□□□□ -1.25
UPF3B-203ENST00000478840 LRIG2O94898 1065 aa7.24□□□□□ -1.25
UPF3B-203ENST00000478840 TP53P04637 393 aaPredicted RBP7.24□□□□□ -1.25
UPF3B-203ENST00000478840 FGFR1P11362 822 aa7.24□□□□□ -1.25
UPF3B-203ENST00000478840 PPP2R2AP63151 447 aa7.24□□□□□ -1.25
UPF3B-203ENST00000478840 ANKRD34AQ69YU3 496 aa7.24□□□□□ -1.25
UPF3B-203ENST00000478840 SVOPQ8N4V2 548 aa7.24□□□□□ -1.25
UPF3B-203ENST00000478840 C2CD4AQ8NCU7 369 aaPredicted RBP7.24□□□□□ -1.25
UPF3B-203ENST00000478840 AARSD1Q9BTE6 412 aaKnown RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms