RNA–Protein interactions for RNA: ENST00000478603.5

C9orf3-216, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-216ENST00000478603 PAGR1Q9BTK6 254 aa27.58■■■□□ 2.01
C9orf3-216ENST00000478603 DDX24Q9GZR7 859 aaKnown RBP eCLIP27.58■■■□□ 2.01
C9orf3-216ENST00000478603 SGPL1O95470 568 aa27.57■■■□□ 2
C9orf3-216ENST00000478603 SEPT2Q15019 361 aa27.57■■■□□ 2
C9orf3-216ENST00000478603 SLC44A5Q8NCS7 719 aa27.57■■■□□ 2
C9orf3-216ENST00000478603 UBE2Q1Q7Z7E8 422 aa27.56■■■□□ 2
C9orf3-216ENST00000478603 GCC1Q96CN9 775 aa27.56■■■□□ 2
C9orf3-216ENST00000478603 DEFB118Q96PH6 123 aa27.56■■■□□ 2
C9orf3-216ENST00000478603 KIAA1683Q9H0B3 1180 aa27.56■■■□□ 2
C9orf3-216ENST00000478603 MPHOSPH10O00566 681 aaKnown RBP27.55■■■□□ 2
C9orf3-216ENST00000478603 USP14P54578 494 aa27.55■■■□□ 2
C9orf3-216ENST00000478603 ERVK-9P63128 1117 aa27.55■■■□□ 2
C9orf3-216ENST00000478603 ERVK-24P63145 666 aa27.55■■■□□ 2
C9orf3-216ENST00000478603 TRIM32Q13049 653 aa27.55■■■□□ 2
C9orf3-216ENST00000478603 DYNLL2Q96FJ2 89 aa27.55■■■□□ 2
C9orf3-216ENST00000478603 PORCNQ9H237 461 aa27.55■■■□□ 2
C9orf3-216ENST00000478603 CEP290O15078 2479 aa27.55■■■□□ 2
C9orf3-216ENST00000478603 USP17L15C9J2P7 530 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 USP17L13C9JLJ4 530 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 USP17L11C9JVI0 530 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 USP17L18D6R9N7 530 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 USP17L22D6RA61 530 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 USP17L17D6RBQ6 530 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 USP17L19D6RCP7 530 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 USP17L20D6RJB6 530 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 VCAM1P19320 739 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 CYP2B6P20813 491 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 USP17L24Q0WX57 530 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 DCTPP1Q9H773 170 aa27.54■■■□□ 2
C9orf3-216ENST00000478603 PAK6Q9NQU5 681 aaPredicted RBP27.54■■■□□ 2
C9orf3-216ENST00000478603 SMIM22K7EJ46 135 aa27.53■■■□□ 2
C9orf3-216ENST00000478603 FARP2O94887 1054 aaPredicted RBP27.53■■■□□ 2
C9orf3-216ENST00000478603 HMGCRP04035 888 aa27.53■■■□□ 2
C9orf3-216ENST00000478603 UBE3CQ15386 1083 aa27.53■■■□□ 2
C9orf3-216ENST00000478603 CATSPERGQ6ZRH7 1159 aa27.53■■■□□ 2
C9orf3-216ENST00000478603 GTF3C2Q8WUA4 911 aaPredicted RBP27.53■■■□□ 2
C9orf3-216ENST00000478603 ATP8A2Q9NTI2 1148 aa27.53■■■□□ 2
C9orf3-216ENST00000478603 ECHDC1Q9NTX5 307 aa27.53■■■□□ 2
C9orf3-216ENST00000478603 CYP2D7A0A087X1C5 515 aa27.52■■■□□ 2
C9orf3-216ENST00000478603 H0YGN5 161 aa27.52■■■□□ 2
C9orf3-216ENST00000478603 TFRCP02786 760 aaKnown RBP27.52■■■□□ 2
C9orf3-216ENST00000478603 TSHZ3Q63HK5 1081 aa27.52■■■□□ 2
C9orf3-216ENST00000478603 TRIB2Q92519 343 aa27.52■■■□□ 2
C9orf3-216ENST00000478603 DPF3Q92784 378 aa27.52■■■□□ 2
C9orf3-216ENST00000478603 NUDT12Q9BQG2 462 aa27.52■■■□□ 2
C9orf3-216ENST00000478603 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.52■■■□□ 21e-7■■■■■ 39.6
C9orf3-216ENST00000478603 A0A1W2PRG0 241 aa27.51■■□□□ 1.99
C9orf3-216ENST00000478603 CNMDO75829 334 aa27.51■■□□□ 1.99
C9orf3-216ENST00000478603 MAPK4P31152 587 aa27.51■■□□□ 1.99
C9orf3-216ENST00000478603 HABP4Q5JVS0 413 aaKnown RBP27.51■■□□□ 1.99
C9orf3-216ENST00000478603 CCAR1Q8IX12 1150 aaKnown RBP27.51■■□□□ 1.99
C9orf3-216ENST00000478603 PUS7LQ9H0K6 701 aaKnown RBP27.51■■□□□ 1.99
C9orf3-216ENST00000478603 RPAP3Q9H6T3 665 aaPredicted RBP27.51■■□□□ 1.99
C9orf3-216ENST00000478603 GPR142Q7Z601 462 aa27.5■■□□□ 1.99
C9orf3-216ENST00000478603 SWAP70Q9UH65 585 aa27.5■■□□□ 1.99
C9orf3-216ENST00000478603 RABGAP1Q9Y3P9 1069 aa27.5■■□□□ 1.99
C9orf3-216ENST00000478603 SLC4A4Q9Y6R1 1079 aa27.5■■□□□ 1.99
C9orf3-216ENST00000478603 USP17L12C9JPN9 530 aa27.49■■□□□ 1.99
C9orf3-216ENST00000478603 USP17L21D6R901 530 aa27.49■■□□□ 1.99
C9orf3-216ENST00000478603 AKR1B1P15121 316 aa27.49■■□□□ 1.99
C9orf3-216ENST00000478603 ZSCAN25Q6NSZ9 544 aa27.49■■□□□ 1.99
C9orf3-216ENST00000478603 CLEC10AQ8IUN9 316 aa27.49■■□□□ 1.99
C9orf3-216ENST00000478603 SOCS4Q8WXH5 440 aa27.49■■□□□ 1.99
C9orf3-216ENST00000478603 CRISPLD2Q9H0B8 497 aa27.49■■□□□ 1.99
C9orf3-216ENST00000478603 C12orf60Q5U649 245 aa27.48■■□□□ 1.99
C9orf3-216ENST00000478603 TMEM179Q6ZVK1 233 aa27.48■■□□□ 1.99
C9orf3-216ENST00000478603 PLEKHH3Q7Z736 793 aa27.48■■□□□ 1.99
C9orf3-216ENST00000478603 HTATIP2Q9BUP3 242 aa27.48■■□□□ 1.99
C9orf3-216ENST00000478603 PCDHB15Q9Y5E8 787 aa27.48■■□□□ 1.99
C9orf3-216ENST00000478603 RPTORQ8N122 1335 aa27.47■■□□□ 1.99
C9orf3-216ENST00000478603 SPDYE16A6NNV3 312 aaPredicted RBP27.47■■□□□ 1.99
C9orf3-216ENST00000478603 USP6NLQ92738 828 aa27.47■■□□□ 1.99
C9orf3-216ENST00000478603 HMX1Q9NP08 348 aaPredicted RBP27.47■■□□□ 1.99
C9orf3-216ENST00000478603 BTBD7Q9P203 1132 aa27.47■■□□□ 1.99
C9orf3-216ENST00000478603 COLQQ9Y215 455 aaPredicted RBP27.47■■□□□ 1.99
C9orf3-216ENST00000478603 CDK8P49336 464 aa27.46■■□□□ 1.99
C9orf3-216ENST00000478603 KIAA1755Q5JYT7 1200 aa27.46■■□□□ 1.99
C9orf3-216ENST00000478603 MORN1Q5T089 497 aa27.46■■□□□ 1.99
C9orf3-216ENST00000478603 GPATCH3Q96I76 525 aa27.46■■□□□ 1.99
C9orf3-216ENST00000478603 CWC22Q9HCG8 908 aaKnown RBP27.46■■□□□ 1.99
C9orf3-216ENST00000478603 RLFQ13129 1914 aa27.45■■□□□ 1.99
C9orf3-216ENST00000478603 XRCC5P13010 732 aaKnown RBP27.45■■□□□ 1.98
C9orf3-216ENST00000478603 CCL14Q16627 93 aa27.45■■□□□ 1.98
C9orf3-216ENST00000478603 WDR78Q5VTH9 848 aa27.45■■□□□ 1.98
C9orf3-216ENST00000478603 CTR9Q6PD62 1173 aa27.45■■□□□ 1.98
C9orf3-216ENST00000478603 LBX2Q6XYB7 198 aa27.45■■□□□ 1.98
C9orf3-216ENST00000478603 AMOTL1Q8IY63 956 aa27.45■■□□□ 1.98
C9orf3-216ENST00000478603 DDRGK1Q96HY6 314 aa27.45■■□□□ 1.98
C9orf3-216ENST00000478603 PRKAR2AP13861 404 aaKnown RBP27.44■■□□□ 1.98
C9orf3-216ENST00000478603 RGS2P41220 211 aa27.44■■□□□ 1.98
C9orf3-216ENST00000478603 CCNA1P78396 465 aa27.44■■□□□ 1.98
C9orf3-216ENST00000478603 C16orf86Q6ZW13 317 aa27.44■■□□□ 1.98
C9orf3-216ENST00000478603 SIAH1Q8IUQ4 282 aa27.44■■□□□ 1.98
C9orf3-216ENST00000478603 KBTBD3Q8NAB2 608 aa27.44■■□□□ 1.98
C9orf3-216ENST00000478603 DIS3LQ8TF46 1054 aaKnown RBP27.44■■□□□ 1.98
C9orf3-216ENST00000478603 TANGO6Q9C0B7 1094 aa27.44■■□□□ 1.98
C9orf3-216ENST00000478603 ALPK3Q96L96 1907 aa27.43■■□□□ 1.98
C9orf3-216ENST00000478603 ZKSCAN1P17029 563 aaPredicted RBP27.43■■□□□ 1.98
C9orf3-216ENST00000478603 ICA1Q05084 483 aa27.43■■□□□ 1.98
C9orf3-216ENST00000478603 MAP3K21Q5TCX8 1036 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 112.2 ms