RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 OLFM4Q6UX06 510 aa8.76□□□□□ -1.01
CCDC88A-213ENST00000476903 SMC1BQ8NDV3 1235 aa8.76□□□□□ -1.01
CCDC88A-213ENST00000476903 PSMD1Q99460 953 aa8.76□□□□□ -1.01
CCDC88A-213ENST00000476903 TMX4Q9H1E5 349 aaPredicted RBP8.76□□□□□ -1.01
CCDC88A-213ENST00000476903 ZNF277Q9NRM2 450 aaPredicted RBP8.76□□□□□ -1.01
CCDC88A-213ENST00000476903 TRMT112Q9UI30 125 aaKnown RBP8.76□□□□□ -1.01
CCDC88A-213ENST00000476903 SNED1Q8TER0 1413 aa8.75□□□□□ -1.01
CCDC88A-213ENST00000476903 ELL2O00472 640 aaPredicted RBP8.75□□□□□ -1.01
CCDC88A-213ENST00000476903 BACH1O14867 736 aa8.75□□□□□ -1.01
CCDC88A-213ENST00000476903 IARSP41252 1262 aaKnown RBP8.75□□□□□ -1.01
CCDC88A-213ENST00000476903 CCDC30Q5VVM6 783 aa8.75□□□□□ -1.01
CCDC88A-213ENST00000476903 WWC1Q8IX03 1113 aa8.75□□□□□ -1.01
CCDC88A-213ENST00000476903 SYNE4Q8N205 404 aa8.75□□□□□ -1.01
CCDC88A-213ENST00000476903 C8orf58Q8NAV2 365 aa8.75□□□□□ -1.01
CCDC88A-213ENST00000476903 LILRB5O75023 590 aa8.74□□□□□ -1.01
CCDC88A-213ENST00000476903 DDNO94850 711 aaPredicted RBP8.74□□□□□ -1.01
CCDC88A-213ENST00000476903 HCLS1P14317 486 aaPredicted RBP8.74□□□□□ -1.01
CCDC88A-213ENST00000476903 TBCELQ5QJ74 424 aa8.74□□□□□ -1.01
CCDC88A-213ENST00000476903 SLC9A9Q8IVB4 645 aa8.74□□□□□ -1.01
CCDC88A-213ENST00000476903 TSR2Q969E8 191 aaKnown RBP8.74□□□□□ -1.01
CCDC88A-213ENST00000476903 ISCA1Q9BUE6 129 aa8.74□□□□□ -1.01
CCDC88A-213ENST00000476903 ABCC4O15439 1325 aa8.74□□□□□ -1.01
CCDC88A-213ENST00000476903 IL16Q14005 1332 aa8.74□□□□□ -1.01
CCDC88A-213ENST00000476903 MYH3P11055 1940 aa8.74□□□□□ -1.01
CCDC88A-213ENST00000476903 IQCA1LA6NCM1 817 aa8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 FZD9O00144 591 aa8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 TCERG1O14776 1098 aaKnown RBP8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 BBOX1O75936 387 aa8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 DDX58O95786 925 aaKnown RBP8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 DDX46Q7L014 1031 aaKnown RBP8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 TSPYL6Q8N831 410 aa8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 JDP2Q8WYK2 163 aa8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 PHAXQ9H814 394 aaKnown RBP8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 ATP6V0A2Q9Y487 856 aa8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 LRRC37AA6NMS7 1700 aa8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 ZNF541Q9H0D2 1346 aa8.73□□□□□ -1.01
CCDC88A-213ENST00000476903 HSP90B1P14625 803 aaKnown RBP8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 BRPF1P55201 1214 aaPredicted RBP8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 NRG1Q02297 640 aaPredicted RBP8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 GRAPQ13588 217 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 TWISTNBQ3B726 338 aaPredicted RBP8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 TMC4Q7Z404 712 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 TNS4Q8IZW8 715 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 LARGE2Q8N3Y3 721 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 SUPT20HQ8NEM7 779 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 GRAPLQ8TC17 118 aaPredicted RBP8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 TP53INP1Q96A56 240 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 ZNF428Q96B54 188 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 FAM89AQ96GI7 184 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 STK31Q9BXU1 1019 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 VPS33BQ9H267 617 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 GDPD2Q9HCC8 539 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 BRD7Q9NPI1 651 aa8.72□□□□□ -1.01
CCDC88A-213ENST00000476903 EIF6P56537 245 aaKnown RBP8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 SF3B3Q15393 1217 aaKnown RBP8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 DPP8Q6V1X1 898 aaPredicted RBP8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 WDR63Q8IWG1 891 aa8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 SP8Q8IXZ3 490 aa8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 NIM1KQ8IY84 436 aa8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 GPC2Q8N158 579 aa8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 ZBTB38Q8NAP3 1195 aaPredicted RBP8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 CCDC191Q8NCU4 936 aa8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 MYD88Q99836 296 aa8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 FANCIQ9NVI1 1328 aa8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 COL4A5P29400 1685 aa8.71□□□□□ -1.02
CCDC88A-213ENST00000476903 IRS4O14654 1257 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 PPIP5K2O43314 1243 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 GTF2IP78347 998 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 TYRO3Q06418 890 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 AOC3Q16853 763 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 KSR2Q6VAB6 950 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 SLC51AQ86UW1 340 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 LDHDQ86WU2 507 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 FAM9BQ8IZU0 186 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 ZNF280CQ8ND82 737 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 HSH2DQ96JZ2 352 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 METTL22Q9BUU2 404 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 RTFDC1Q9BY42 306 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 TAF1DQ9H5J8 278 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 NEUROD4Q9HD90 331 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 PRM3Q9NNZ6 103 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 CWC25Q9NXE8 425 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 HACL1Q9UJ83 578 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 ZNF232Q9UNY5 417 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 KCNH4Q9UQ05 1017 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 MAP3K2Q9Y2U5 619 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 ADAMTSL1Q8N6G6 1762 aa8.7□□□□□ -1.02
CCDC88A-213ENST00000476903 SPEF2Q9C093 1822 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 SERTM1A2A2V5 107 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 PI4KAP2A4QPH2 592 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 PCCAP05165 728 aaPredicted RBP8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 EPHX2P34913 555 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 AFF1P51825 1210 aaKnown RBP8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 NEXNQ0ZGT2 675 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 SEMA3FQ13275 785 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 C1orf53Q5VUE5 145 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 FMR1NBQ8N0W7 255 aaPredicted RBP8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 DNAJC5GQ8N7S2 189 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 PI4KAP1Q8N8J0 262 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 RHPN1Q8TCX5 695 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms