RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 NUP133Q8WUM0 1156 aa18.89■□□□□ 0.62
TMEM53-208ENST00000476724 CD209Q9NNX6 404 aa18.89■□□□□ 0.62
TMEM53-208ENST00000476724 PAXBP1Q9Y5B6 917 aa18.89■□□□□ 0.62
TMEM53-208ENST00000476724 DUOX1Q9NRD9 1551 aa18.89■□□□□ 0.61
TMEM53-208ENST00000476724 BIN1O00499 593 aa18.89■□□□□ 0.61
TMEM53-208ENST00000476724 CALM1P0DP23 149 aa18.89■□□□□ 0.61
TMEM53-208ENST00000476724 CALM2P0DP24 149 aa18.89■□□□□ 0.61
TMEM53-208ENST00000476724 CALM3P0DP25 149 aa18.89■□□□□ 0.61
TMEM53-208ENST00000476724 SKILP12757 684 aa18.89■□□□□ 0.61
TMEM53-208ENST00000476724 SF3B2Q13435 895 aaKnown RBP18.89■□□□□ 0.61
TMEM53-208ENST00000476724 NCAPHQ15003 741 aa18.89■□□□□ 0.61
TMEM53-208ENST00000476724 IQCA1Q86XH1 822 aa18.89■□□□□ 0.61
TMEM53-208ENST00000476724 ZSCAN10Q96SZ4 725 aaPredicted RBP18.89■□□□□ 0.61
TMEM53-208ENST00000476724 KCND1Q9NSA2 647 aa18.89■□□□□ 0.61
TMEM53-208ENST00000476724 RBM28Q9NW13 759 aaKnown RBP18.89■□□□□ 0.61
TMEM53-208ENST00000476724 MYH6P13533 1939 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 UBE2Q2LH0YL09 131 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 C6orf229H3BNL8 230 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 PTPREP23469 700 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 TOB1P50616 345 aaPredicted RBP18.88■□□□□ 0.61
TMEM53-208ENST00000476724 FILIP1Q7Z7B0 1213 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 CNNM3Q8NE01 707 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 MASTLQ96GX5 879 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 CLIC6Q96NY7 704 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 IGSF3O75054 1194 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 TPD52L1Q16890 204 aaPredicted RBP18.88■□□□□ 0.61
TMEM53-208ENST00000476724 GLIPR1L2Q4G1C9 344 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 TMC4Q7Z404 712 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 ZNF622Q969S3 477 aaKnown RBP eCLIP18.88■□□□□ 0.61
TMEM53-208ENST00000476724 KCNJ14Q9UNX9 436 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 KIAA1551Q9HCM1 1747 aa18.88■□□□□ 0.61
TMEM53-208ENST00000476724 TNNT1P13805 278 aa18.87■□□□□ 0.61
TMEM53-208ENST00000476724 ALDH1B1P30837 517 aa18.87■□□□□ 0.61
TMEM53-208ENST00000476724 CATIPQ7Z7H3 387 aa18.87■□□□□ 0.61
TMEM53-208ENST00000476724 C2CD5Q86YS7 1000 aa18.87■□□□□ 0.61
TMEM53-208ENST00000476724 STK11IPQ8N1F8 1099 aa18.87■□□□□ 0.61
TMEM53-208ENST00000476724 CCDC150Q8NCX0 1101 aa18.87■□□□□ 0.61
TMEM53-208ENST00000476724 TAOK2Q9UL54 1235 aa18.87■□□□□ 0.61
TMEM53-208ENST00000476724 MYH2Q9UKX2 1941 aa18.87■□□□□ 0.61
TMEM53-208ENST00000476724 SMIM22K7EJ46 135 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 RIOK3O14730 519 aaKnown RBP18.86■□□□□ 0.61
TMEM53-208ENST00000476724 PRPF3O43395 683 aaKnown RBP18.86■□□□□ 0.61
TMEM53-208ENST00000476724 CCZ1BP86790 482 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 CCZ1P86791 482 aaPredicted RBP18.86■□□□□ 0.61
TMEM53-208ENST00000476724 LONRF3Q496Y0 759 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 IFIT1BQ5T764 474 aaKnown RBP18.86■□□□□ 0.61
TMEM53-208ENST00000476724 ENAHQ8N8S7 591 aaPredicted RBP18.86■□□□□ 0.61
TMEM53-208ENST00000476724 XPO4Q9C0E2 1151 aaKnown RBP18.86■□□□□ 0.61
TMEM53-208ENST00000476724 AATFQ9NY61 560 aaKnown RBP eCLIP18.86■□□□□ 0.61
TMEM53-208ENST00000476724 IFNKQ9P0W0 207 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 FBXO2Q9UK22 296 aaPredicted RBP18.86■□□□□ 0.61
TMEM53-208ENST00000476724 SLX4Q8IY92 1834 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 RIMBP2O15034 1052 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 SMC2O95347 1197 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 IL1R1P14778 569 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 CHRNA5P30532 468 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 KANK3Q6NY19 840 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 WDR66Q8TBY9 1149 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 C16orf45Q96MC5 204 aaPredicted RBP18.86■□□□□ 0.61
TMEM53-208ENST00000476724 SRPRBQ9Y5M8 271 aaKnown RBP18.86■□□□□ 0.61
TMEM53-208ENST00000476724 DLEC1Q9Y238 1755 aa18.86■□□□□ 0.61
TMEM53-208ENST00000476724 CBFA2T2O43439 604 aa18.85■□□□□ 0.61
TMEM53-208ENST00000476724 NRDCO43847 1150 aa18.85■□□□□ 0.61
TMEM53-208ENST00000476724 DDAH1O94760 285 aa18.85■□□□□ 0.61
TMEM53-208ENST00000476724 NT5C2P49902 561 aa18.85■□□□□ 0.61
TMEM53-208ENST00000476724 MYL5Q02045 173 aa18.85■□□□□ 0.61
TMEM53-208ENST00000476724 PNOCQ13519 176 aa18.85■□□□□ 0.61
TMEM53-208ENST00000476724 CTR9Q6PD62 1173 aa18.85■□□□□ 0.61
TMEM53-208ENST00000476724 METTL16Q86W50 562 aaKnown RBP18.85■□□□□ 0.61
TMEM53-208ENST00000476724 CCDC82Q8N4S0 544 aa18.85■□□□□ 0.61
TMEM53-208ENST00000476724 ATP8A2Q9NTI2 1148 aa18.85■□□□□ 0.61
TMEM53-208ENST00000476724 ORC4O43929 436 aa18.85■□□□□ 0.61
TMEM53-208ENST00000476724 DZIP1Q86YF9 867 aaKnown RBP18.85■□□□□ 0.61
TMEM53-208ENST00000476724 CRNKL1Q9BZJ0 848 aaKnown RBP18.85■□□□□ 0.61
TMEM53-208ENST00000476724 CTIFO43310 598 aaKnown RBP18.84■□□□□ 0.61
TMEM53-208ENST00000476724 BMP15O95972 392 aa18.84■□□□□ 0.61
TMEM53-208ENST00000476724 LDHBP07195 334 aaKnown RBP18.84■□□□□ 0.61
TMEM53-208ENST00000476724 FANCCQ00597 558 aa18.84■□□□□ 0.61
TMEM53-208ENST00000476724 MDM2Q00987 491 aaPredicted RBP18.84■□□□□ 0.61
TMEM53-208ENST00000476724 ARID5BQ14865 1188 aa18.84■□□□□ 0.61
TMEM53-208ENST00000476724 PCDHA5Q9Y5H7 936 aa18.84■□□□□ 0.61
TMEM53-208ENST00000476724 KCNJ6P48051 423 aa18.83■□□□□ 0.61
TMEM53-208ENST00000476724 FUT2Q10981 343 aa18.83■□□□□ 0.61
TMEM53-208ENST00000476724 DIXDC1Q155Q3 683 aa18.83■□□□□ 0.61
TMEM53-208ENST00000476724 SPTY2D1Q68D10 685 aaPredicted RBP18.83■□□□□ 0.61
TMEM53-208ENST00000476724 CMTR1Q8N1G2 835 aaKnown RBP18.83■□□□□ 0.61
TMEM53-208ENST00000476724 CCDC34Q96HJ3 373 aa18.83■□□□□ 0.61
TMEM53-208ENST00000476724 USP17L12C9JPN9 530 aa18.83■□□□□ 0.6
TMEM53-208ENST00000476724 USP17L21D6R901 530 aa18.83■□□□□ 0.6
TMEM53-208ENST00000476724 H0YIN7 160 aa18.83■□□□□ 0.6
TMEM53-208ENST00000476724 KIF2AO00139 706 aaPredicted RBP18.83■□□□□ 0.6
TMEM53-208ENST00000476724 TROAPQ12815 778 aa18.83■□□□□ 0.6
TMEM53-208ENST00000476724 NR5A1Q13285 461 aa18.83■□□□□ 0.6
TMEM53-208ENST00000476724 PKN1Q16512 942 aa18.83■□□□□ 0.6
TMEM53-208ENST00000476724 SBK1Q52WX2 424 aa18.83■□□□□ 0.6
TMEM53-208ENST00000476724 NT5DC1Q5TFE4 455 aa18.83■□□□□ 0.6
TMEM53-208ENST00000476724 TMC6Q7Z403 805 aa18.83■□□□□ 0.6
TMEM53-208ENST00000476724 TRIML1Q8N9V2 468 aa18.83■□□□□ 0.6
TMEM53-208ENST00000476724 PHF20Q9BVI0 1012 aa18.83■□□□□ 0.6
TMEM53-208ENST00000476724 BRMS1Q9HCU9 246 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms