RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 MAPK4P31152 587 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 SHMT1P34896 483 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 RRP1P56182 461 aaKnown RBP13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 ERVK-9P63128 1117 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 ERVK-24P63145 666 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 USP17L24Q0WX57 530 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 ZYXQ15942 572 aaKnown RBP13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 Q3C1V9 767 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 CCAR1Q8IX12 1150 aaKnown RBP13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 C12orf42Q96LP6 360 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 NUDT12Q9BQG2 462 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 COLQQ9Y215 455 aaPredicted RBP13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 CEP290O15078 2479 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 ZNFX1Q9P2E3 1918 aaKnown RBP13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 RPTORQ8N122 1335 aa13.39□□□□□ -0.27
SEMA4D-216ENST00000474258 TCRBV5S4A2TA0A5A2 114 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 PEX10O60683 326 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 ATP5JP18859 108 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 CYP2B6P20813 491 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 PDE3AQ14432 1141 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 SOCS4Q8WXH5 440 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 PAGR1Q9BTK6 254 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 KIAA1683Q9H0B3 1180 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 CRISPLD2Q9H0B8 497 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 BOLA2Q9H3K6 86 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 HMX1Q9NP08 348 aaPredicted RBP13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 PAG1Q9NWQ8 432 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 MCM9Q9NXL9 1143 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 NR2E3Q9Y5X4 410 aa13.38□□□□□ -0.27
SEMA4D-216ENST00000474258 XRCC5P13010 732 aaKnown RBP13.37□□□□□ -0.27
SEMA4D-216ENST00000474258 GABPAQ06546 454 aa13.37□□□□□ -0.27
SEMA4D-216ENST00000474258 CATSPERGQ6ZRH7 1159 aa13.37□□□□□ -0.27
SEMA4D-216ENST00000474258 TRMT44Q8IYL2 757 aaKnown RBP13.37□□□□□ -0.27
SEMA4D-216ENST00000474258 SDR42E1Q8WUS8 393 aa13.37□□□□□ -0.27
SEMA4D-216ENST00000474258 EDC3Q96F86 508 aaKnown RBP13.37□□□□□ -0.27
SEMA4D-216ENST00000474258 HAUS7Q99871 368 aa13.37□□□□□ -0.27
SEMA4D-216ENST00000474258 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.37□□□□□ -0.27
SEMA4D-216ENST00000474258 DCP1AQ9NPI6 582 aaPredicted RBP13.37□□□□□ -0.27
SEMA4D-216ENST00000474258 RABGAP1Q9Y3P9 1069 aa13.37□□□□□ -0.27
SEMA4D-216ENST00000474258 GUCY1A2P33402 732 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 ADD2P35612 726 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 CCNA1P78396 465 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 TRIM32Q13049 653 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 SEPT2Q15019 361 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 POTEEQ6S8J3 1075 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 GPR142Q7Z601 462 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 PLEKHH3Q7Z736 793 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 LCORLQ8N3X6 602 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 ANKLE1Q8NAG6 615 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 ACER1Q8TDN7 264 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 TRIB2Q92519 343 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 LRRCC1Q9C099 1032 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 PORCNQ9H237 461 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 ATP8A2Q9NTI2 1148 aa13.36□□□□□ -0.27
SEMA4D-216ENST00000474258 RLFQ13129 1914 aa13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 MPHOSPH10O00566 681 aaKnown RBP13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 EVI5O60447 810 aa13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 VCAM1P19320 739 aa13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 RGS2P41220 211 aa13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 FXR1P51114 621 aaKnown RBP eCLIP13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 MORN1Q5T089 497 aa13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 CHRDL2Q6WN34 429 aa13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 LBX2Q6XYB7 198 aa13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 NECAB2Q7Z6G3 386 aa13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 USP6NLQ92738 828 aa13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 PAWRQ96IZ0 340 aaKnown RBP13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 ARMT1Q9H993 441 aa13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 CWC22Q9HCG8 908 aaKnown RBP13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 SWAP70Q9UH65 585 aa13.35□□□□□ -0.27
SEMA4D-216ENST00000474258 CNMDO75829 334 aa13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 GLRX3O76003 335 aaKnown RBP13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 MBD4O95243 580 aa13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 PRKAR2AP13861 404 aaKnown RBP13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 ZKSCAN1P17029 563 aaPredicted RBP13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 EVX2Q03828 476 aa13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 MAP3K21Q5TCX8 1036 aa13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 C20orf194Q5TEA3 1177 aa13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 TMEM179Q6ZVK1 233 aa13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 RPAP3Q9H6T3 665 aaPredicted RBP13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 PARP14Q460N5 1801 aa13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 FRMPD3Q5JV73 1810 aa13.34□□□□□ -0.27
SEMA4D-216ENST00000474258 PRKAB2O43741 272 aa13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 SMARCA5O60264 1052 aaPredicted RBP13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 CYP2D6P10635 497 aa13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 MAP2K5Q13163 448 aa13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 UBE3CQ15386 1083 aa13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 SLFNL1Q499Z3 407 aa13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 WDR78Q5VTH9 848 aa13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 ZSCAN25Q6NSZ9 544 aa13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 AMOTL1Q8IY63 956 aa13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 DDRGK1Q96HY6 314 aa13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 APBA2Q99767 749 aa13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 COL11A1P12107 1806 aaPredicted RBP13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 TRIOBPQ9H2D6 2365 aa13.33□□□□□ -0.28
SEMA4D-216ENST00000474258 A0A1W2PRG0 241 aa13.32□□□□□ -0.28
SEMA4D-216ENST00000474258 SLC15A5A6NIM6 579 aa13.32□□□□□ -0.28
SEMA4D-216ENST00000474258 SPDYE16A6NNV3 312 aaPredicted RBP13.32□□□□□ -0.28
SEMA4D-216ENST00000474258 CACNB2Q08289 660 aaPredicted RBP13.32□□□□□ -0.28
SEMA4D-216ENST00000474258 COG2Q14746 738 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms