RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 GJA8P48165 433 aa20.15■□□□□ 0.82
USP40-212ENST00000473191 FEZ1Q99689 392 aa20.15■□□□□ 0.82
USP40-212ENST00000473191 PORCNQ9H237 461 aa20.15■□□□□ 0.82
USP40-212ENST00000473191 CNMDO75829 334 aa20.14■□□□□ 0.81
USP40-212ENST00000473191 SLC34A2O95436 690 aa20.14■□□□□ 0.81
USP40-212ENST00000473191 GJB1P08034 283 aa20.14■□□□□ 0.81
USP40-212ENST00000473191 UBXN2AP68543 259 aa20.14■□□□□ 0.81
USP40-212ENST00000473191 KIAA1755Q5JYT7 1200 aa20.14■□□□□ 0.81
USP40-212ENST00000473191 OTUD7AQ8TE49 926 aaPredicted RBP20.14■□□□□ 0.81
USP40-212ENST00000473191 PXYLP1Q8TE99 480 aa20.14■□□□□ 0.81
USP40-212ENST00000473191 C12orf42Q96LP6 360 aa20.14■□□□□ 0.81
USP40-212ENST00000473191 PAGR1Q9BTK6 254 aa20.14■□□□□ 0.81
USP40-212ENST00000473191 ECHDC1Q9NTX5 307 aa20.14■□□□□ 0.81
USP40-212ENST00000473191 MPHOSPH10O00566 681 aaKnown RBP20.13■□□□□ 0.81
USP40-212ENST00000473191 VCAM1P19320 739 aa20.13■□□□□ 0.81
USP40-212ENST00000473191 RRP1P56182 461 aaKnown RBP20.13■□□□□ 0.81
USP40-212ENST00000473191 UBE3CQ15386 1083 aa20.13■□□□□ 0.81
USP40-212ENST00000473191 UBE2Q1Q7Z7E8 422 aa20.13■□□□□ 0.81
USP40-212ENST00000473191 U2AF1L4Q8WU68 220 aaKnown RBP20.13■□□□□ 0.81
USP40-212ENST00000473191 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.13■□□□□ 0.81
USP40-212ENST00000473191 KIAA1683Q9H0B3 1180 aa20.13■□□□□ 0.81
USP40-212ENST00000473191 USP17L12C9JPN9 530 aa20.12■□□□□ 0.81
USP40-212ENST00000473191 USP17L21D6R901 530 aa20.12■□□□□ 0.81
USP40-212ENST00000473191 AKR1B1P15121 316 aa20.12■□□□□ 0.81
USP40-212ENST00000473191 CYP2B6P20813 491 aa20.12■□□□□ 0.81
USP40-212ENST00000473191 ERVK-9P63128 1117 aa20.12■□□□□ 0.81
USP40-212ENST00000473191 ERVK-24P63145 666 aa20.12■□□□□ 0.81
USP40-212ENST00000473191 SIAH1Q8IUQ4 282 aa20.12■□□□□ 0.81
USP40-212ENST00000473191 GPRC5AQ8NFJ5 357 aa20.12■□□□□ 0.81
USP40-212ENST00000473191 YTHDC1Q96MU7 727 aaKnown RBP20.12■□□□□ 0.81
USP40-212ENST00000473191 CABP5Q9NP86 173 aa20.12■□□□□ 0.81
USP40-212ENST00000473191 C12orf60Q5U649 245 aa20.11■□□□□ 0.81
USP40-212ENST00000473191 CATSPERGQ6ZRH7 1159 aa20.11■□□□□ 0.81
USP40-212ENST00000473191 TRIB2Q92519 343 aa20.11■□□□□ 0.81
USP40-212ENST00000473191 DEFB118Q96PH6 123 aa20.11■□□□□ 0.81
USP40-212ENST00000473191 CRBNQ96SW2 442 aa20.11■□□□□ 0.81
USP40-212ENST00000473191 RPAP3Q9H6T3 665 aaPredicted RBP20.11■□□□□ 0.81
USP40-212ENST00000473191 SLC4A4Q9Y6R1 1079 aa20.11■□□□□ 0.81
USP40-212ENST00000473191 USP17L15C9J2P7 530 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 USP17L13C9JLJ4 530 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 USP17L11C9JVI0 530 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 USP17L18D6R9N7 530 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 USP17L22D6RA61 530 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 USP17L17D6RBQ6 530 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 USP17L19D6RCP7 530 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 USP17L20D6RJB6 530 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 SGPL1O95470 568 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 USP17L24Q0WX57 530 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 CTR9Q6PD62 1173 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 OSBP2Q969R2 916 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 PAK6Q9NQU5 681 aaPredicted RBP20.1■□□□□ 0.81
USP40-212ENST00000473191 ATP8A2Q9NTI2 1148 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 BTBD7Q9P203 1132 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 MYH8P13535 1937 aa20.1■□□□□ 0.81
USP40-212ENST00000473191 CDK8P49336 464 aa20.09■□□□□ 0.81
USP40-212ENST00000473191 USP14P54578 494 aa20.08■□□□□ 0.81
USP40-212ENST00000473191 CCL14Q16627 93 aa20.08■□□□□ 0.81
USP40-212ENST00000473191 GPR142Q7Z601 462 aa20.08■□□□□ 0.81
USP40-212ENST00000473191 STK11IPQ8N1F8 1099 aa20.08■□□□□ 0.81
USP40-212ENST00000473191 KBTBD3Q8NAB2 608 aa20.08■□□□□ 0.81
USP40-212ENST00000473191 NKX2-3Q8TAU0 364 aa20.08■□□□□ 0.81
USP40-212ENST00000473191 STRBPQ96SI9 672 aaKnown RBP20.08■□□□□ 0.81
USP40-212ENST00000473191 SPDYE16A6NNV3 312 aaPredicted RBP20.07■□□□□ 0.8
USP40-212ENST00000473191 M0R2C6 588 aa20.07■□□□□ 0.8
USP40-212ENST00000473191 C16orf86Q6ZW13 317 aa20.07■□□□□ 0.8
USP40-212ENST00000473191 PI4K2BQ8TCG2 481 aa20.07■□□□□ 0.8
USP40-212ENST00000473191 USP6NLQ92738 828 aa20.07■□□□□ 0.8
USP40-212ENST00000473191 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.07■□□□□ 0.8
USP40-212ENST00000473191 SWAP70Q9UH65 585 aa20.07■□□□□ 0.8
USP40-212ENST00000473191 RLFQ13129 1914 aa20.07■□□□□ 0.8
USP40-212ENST00000473191 GSG1L2A8MUP6 293 aa20.06■□□□□ 0.8
USP40-212ENST00000473191 H0YGN5 161 aa20.06■□□□□ 0.8
USP40-212ENST00000473191 HMGCRP04035 888 aa20.06■□□□□ 0.8
USP40-212ENST00000473191 MORN1Q5T089 497 aa20.06■□□□□ 0.8
USP40-212ENST00000473191 TMEM179Q6ZVK1 233 aa20.06■□□□□ 0.8
USP40-212ENST00000473191 SPICE1Q8N0Z3 855 aa20.06■□□□□ 0.8
USP40-212ENST00000473191 DIS3LQ8TF46 1054 aaKnown RBP20.06■□□□□ 0.8
USP40-212ENST00000473191 SEC62Q99442 399 aaKnown RBP20.06■□□□□ 0.8
USP40-212ENST00000473191 NUDT12Q9BQG2 462 aa20.06■□□□□ 0.8
USP40-212ENST00000473191 EPB41L4AQ9HCS5 686 aaPredicted RBP20.06■□□□□ 0.8
USP40-212ENST00000473191 RABGAP1Q9Y3P9 1069 aa20.06■□□□□ 0.8
USP40-212ENST00000473191 FARP2O94887 1054 aaPredicted RBP20.05■□□□□ 0.8
USP40-212ENST00000473191 TFRCP02786 760 aaKnown RBP20.05■□□□□ 0.8
USP40-212ENST00000473191 ZSCAN25Q6NSZ9 544 aa20.05■□□□□ 0.8
USP40-212ENST00000473191 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.05■□□□□ 0.8
USP40-212ENST00000473191 CRISPLD2Q9H0B8 497 aa20.05■□□□□ 0.8
USP40-212ENST00000473191 RNF113AO15541 343 aaKnown RBP20.04■□□□□ 0.8
USP40-212ENST00000473191 MAPK4P31152 587 aa20.04■□□□□ 0.8
USP40-212ENST00000473191 ICA1Q05084 483 aa20.04■□□□□ 0.8
USP40-212ENST00000473191 PLEKHH3Q7Z736 793 aa20.04■□□□□ 0.8
USP40-212ENST00000473191 APPBP2Q92624 585 aa20.04■□□□□ 0.8
USP40-212ENST00000473191 DPF3Q92784 378 aa20.04■□□□□ 0.8
USP40-212ENST00000473191 FLRT1Q9NZU1 646 aa20.04■□□□□ 0.8
USP40-212ENST00000473191 SALL3Q9BXA9 1300 aa20.03■□□□□ 0.8
USP40-212ENST00000473191 A0A0G2JMZ2 1700 aa20.03■□□□□ 0.8
USP40-212ENST00000473191 GPAA1O43292 621 aa20.03■□□□□ 0.8
USP40-212ENST00000473191 MNX1P50219 401 aaPredicted RBP20.03■□□□□ 0.8
USP40-212ENST00000473191 HABP4Q5JVS0 413 aaKnown RBP20.03■□□□□ 0.8
USP40-212ENST00000473191 MAP3K21Q5TCX8 1036 aa20.03■□□□□ 0.8
USP40-212ENST00000473191 LBX2Q6XYB7 198 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms