RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 CTNNA3Q9UI47 895 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 ANAPC4Q9UJX5 808 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 PNMA3Q9UL41 463 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 AGTPBP1Q9UPW5 1226 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 MYH1P12882 1939 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 SIPA1L1O43166 1804 aa16.89■□□□□ 0.29
BRCA1-211ENST00000472490 DOCK1Q14185 1865 aa16.88■□□□□ 0.29
BRCA1-211ENST00000472490 FOXP2O15409 715 aa16.88■□□□□ 0.29
BRCA1-211ENST00000472490 PCP11498 1178 aaKnown RBP16.88■□□□□ 0.29
BRCA1-211ENST00000472490 HMGCS2P54868 508 aa16.88■□□□□ 0.29
BRCA1-211ENST00000472490 CRHR2Q13324 411 aa16.88■□□□□ 0.29
BRCA1-211ENST00000472490 SEPT2Q15019 361 aa16.88■□□□□ 0.29
BRCA1-211ENST00000472490 USP17L2Q6R6M4 530 aa16.88■□□□□ 0.29
BRCA1-211ENST00000472490 STK11IPQ8N1F8 1099 aa16.88■□□□□ 0.29
BRCA1-211ENST00000472490 KIAA1683Q9H0B3 1180 aa16.88■□□□□ 0.29
BRCA1-211ENST00000472490 KANSL2Q9H9L4 492 aa16.88■□□□□ 0.29
BRCA1-211ENST00000472490 ARHGEF10LQ9HCE6 1279 aa16.88■□□□□ 0.29
BRCA1-211ENST00000472490 GPR25O00155 361 aa16.87■□□□□ 0.29
BRCA1-211ENST00000472490 AKR1B1P15121 316 aa16.87■□□□□ 0.29
BRCA1-211ENST00000472490 ICA1Q05084 483 aa16.87■□□□□ 0.29
BRCA1-211ENST00000472490 MOGSQ13724 837 aa16.87■□□□□ 0.29
BRCA1-211ENST00000472490 SHROOM1Q2M3G4 852 aaPredicted RBP16.87■□□□□ 0.29
BRCA1-211ENST00000472490 PPP4R3BQ5MIZ7 849 aa16.87■□□□□ 0.29
BRCA1-211ENST00000472490 PCNTO95613 3336 aa16.86■□□□□ 0.29
BRCA1-211ENST00000472490 SMIM22K7EJ46 135 aa16.86■□□□□ 0.29
BRCA1-211ENST00000472490 ZNF213O14771 459 aa16.86■□□□□ 0.29
BRCA1-211ENST00000472490 TLR2O60603 784 aa16.86■□□□□ 0.29
BRCA1-211ENST00000472490 RASA1P20936 1047 aa16.86■□□□□ 0.29
BRCA1-211ENST00000472490 OSBPP22059 807 aa16.86■□□□□ 0.29
BRCA1-211ENST00000472490 GUCY1A2P33402 732 aa16.86■□□□□ 0.29
BRCA1-211ENST00000472490 NT5C2P49902 561 aa16.86■□□□□ 0.29
BRCA1-211ENST00000472490 GPAT2Q6NUI2 795 aa16.86■□□□□ 0.29
BRCA1-211ENST00000472490 RNF41Q9H4P4 317 aaPredicted RBP16.86■□□□□ 0.29
BRCA1-211ENST00000472490 LAMB1P07942 1786 aa16.86■□□□□ 0.29
BRCA1-211ENST00000472490 FKTNO75072 461 aa16.85■□□□□ 0.29
BRCA1-211ENST00000472490 TSPY3P0CV98 308 aa16.85■□□□□ 0.29
BRCA1-211ENST00000472490 TSPY8P0CW00 308 aa16.85■□□□□ 0.29
BRCA1-211ENST00000472490 IMMTQ16891 758 aaKnown RBP16.85■□□□□ 0.29
BRCA1-211ENST00000472490 KIAA1211Q6ZU35 1233 aa16.85■□□□□ 0.29
BRCA1-211ENST00000472490 SMCR8Q8TEV9 937 aaPredicted RBP16.85■□□□□ 0.29
BRCA1-211ENST00000472490 SGSM2O43147 1006 aa16.84■□□□□ 0.29
BRCA1-211ENST00000472490 PRDM1O75626 825 aa16.84■□□□□ 0.29
BRCA1-211ENST00000472490 HOXA7P31268 230 aaPredicted RBP16.84■□□□□ 0.29
BRCA1-211ENST00000472490 ARHGEF6Q15052 776 aa16.84■□□□□ 0.29
BRCA1-211ENST00000472490 ZNF296Q8WUU4 475 aaPredicted RBP16.84■□□□□ 0.29
BRCA1-211ENST00000472490 LPAR1Q92633 364 aa16.84■□□□□ 0.29
BRCA1-211ENST00000472490 C12orf42Q96LP6 360 aa16.84■□□□□ 0.29
BRCA1-211ENST00000472490 TSPY2A6NKD2 308 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 ORC4O43929 436 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 IRX3P78415 501 aaPredicted RBP16.83■□□□□ 0.28
BRCA1-211ENST00000472490 TFAP4Q01664 338 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 ATP2B2Q01814 1243 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 SP3Q02447 781 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 CTDSPL2Q05D32 466 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 ZYXQ15942 572 aaKnown RBP16.83■□□□□ 0.28
BRCA1-211ENST00000472490 TREML2Q5T2D2 321 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 MFSD6Q6ZSS7 791 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 SKAP1Q86WV1 359 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 NEDD1Q8NHV4 660 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 ACER1Q8TDN7 264 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 ERO1AQ96HE7 468 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 TOMM22Q9NS69 142 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 EMILIN3Q9NT22 766 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 TMX2Q9Y320 296 aa16.83■□□□□ 0.28
BRCA1-211ENST00000472490 RANBP6O60518 1105 aaKnown RBP16.82■□□□□ 0.28
BRCA1-211ENST00000472490 FGRP09769 529 aa16.82■□□□□ 0.28
BRCA1-211ENST00000472490 EEF2P13639 858 aaKnown RBP16.82■□□□□ 0.28
BRCA1-211ENST00000472490 GCLCP48506 637 aaPredicted RBP16.82■□□□□ 0.28
BRCA1-211ENST00000472490 HAND2P61296 217 aa16.82■□□□□ 0.28
BRCA1-211ENST00000472490 KIF22Q14807 665 aa16.82■□□□□ 0.28
BRCA1-211ENST00000472490 AKNAD1Q5T1N1 836 aa16.82■□□□□ 0.28
BRCA1-211ENST00000472490 STAG1Q8WVM7 1258 aa16.82■□□□□ 0.28
BRCA1-211ENST00000472490 R3HDMLQ9H3Y0 253 aa16.82■□□□□ 0.28
BRCA1-211ENST00000472490 GOPCQ9HD26 462 aa16.82■□□□□ 0.28
BRCA1-211ENST00000472490 NYAP2Q9P242 653 aa16.82■□□□□ 0.28
BRCA1-211ENST00000472490 SYNPO2Q9UMS6 1093 aa16.82■□□□□ 0.28
BRCA1-211ENST00000472490 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.82■□□□□ 0.28
BRCA1-211ENST00000472490 PLIN4Q96Q06 1357 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 BAZ2AQ9UIF9 1905 aaKnown RBP16.81■□□□□ 0.28
BRCA1-211ENST00000472490 A0A1W2PRG0 241 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 USP17L15C9J2P7 530 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 USP17L13C9JLJ4 530 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 USP17L11C9JVI0 530 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 USP17L18D6R9N7 530 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 USP17L22D6RA61 530 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 USP17L17D6RBQ6 530 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 USP17L19D6RCP7 530 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 USP17L20D6RJB6 530 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 CDC45O75419 566 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 TTLL1O95922 423 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 CYP2C8P10632 490 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 USP17L24Q0WX57 530 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 C17orf99Q6UX52 265 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 GTF3C2Q8WUA4 911 aaPredicted RBP16.81■□□□□ 0.28
BRCA1-211ENST00000472490 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.81■□□□□ 0.28
BRCA1-211ENST00000472490 MTMR4Q9NYA4 1195 aa16.81■□□□□ 0.28
BRCA1-211ENST00000472490 VCAM1P19320 739 aa16.8■□□□□ 0.28
BRCA1-211ENST00000472490 FAM47AQ5JRC9 791 aa16.8■□□□□ 0.28
BRCA1-211ENST00000472490 RRP12Q5JTH9 1297 aaKnown RBP16.8■□□□□ 0.28
BRCA1-211ENST00000472490 COL13A1Q5TAT6 717 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms