RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 KIF5BP33176 963 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 PRELPP51888 382 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 ZNF280AP59817 542 aaPredicted RBP10.91□□□□□ -0.66
VPS52-216ENST00000471309 KRT85P78386 507 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 TMTC3Q6ZXV5 915 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 SH3BP5LQ7L8J4 393 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 FERMT3Q86UX7 667 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 METTL16Q86W50 562 aaKnown RBP10.91□□□□□ -0.66
VPS52-216ENST00000471309 ZFPM1Q8IX07 1006 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 CRACR2BQ8N4Y2 399 aaPredicted RBP10.91□□□□□ -0.66
VPS52-216ENST00000471309 PNMA1Q8ND90 353 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 FBXO18Q8NFZ0 1043 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 PHKBQ93100 1093 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 ZBED3Q96IU2 234 aaPredicted RBP10.91□□□□□ -0.66
VPS52-216ENST00000471309 CHAMP1Q96JM3 812 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 ALG1Q9BT22 464 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 SLC26A6Q9BXS9 759 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 PI4KBQ9UBF8 816 aa10.91□□□□□ -0.66
VPS52-216ENST00000471309 CNTNAP5Q8WYK1 1306 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 MYH6P13533 1939 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 DDTLA6NHG4 134 aaPredicted RBP10.9□□□□□ -0.66
VPS52-216ENST00000471309 PPFIA3O75145 1194 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 PRPF40AO75400 957 aaKnown RBP10.9□□□□□ -0.66
VPS52-216ENST00000471309 TOP1P11387 765 aaKnown RBP10.9□□□□□ -0.66
VPS52-216ENST00000471309 EIF6P56537 245 aaKnown RBP10.9□□□□□ -0.66
VPS52-216ENST00000471309 DNM1Q05193 864 aaKnown RBP10.9□□□□□ -0.66
VPS52-216ENST00000471309 FUT2Q10981 343 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 TCP10Q12799 353 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 GRM4Q14833 912 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 CSPP1Q1MSJ5 1256 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 KLHL40Q2TBA0 621 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 PPP4R3BQ5MIZ7 849 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 FOXP4Q8IVH2 680 aaPredicted RBP10.9□□□□□ -0.66
VPS52-216ENST00000471309 CEP95Q96GE4 821 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 CCDC17Q96LX7 622 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 TMEM47Q9BQJ4 181 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.9□□□□□ -0.66
VPS52-216ENST00000471309 FHDC1Q9C0D6 1143 aaPredicted RBP10.9□□□□□ -0.66
VPS52-216ENST00000471309 DNAJC18Q9H819 358 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 ZNF70Q9UC06 446 aaPredicted RBP10.9□□□□□ -0.66
VPS52-216ENST00000471309 STX8Q9UNK0 236 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 CNPY2Q9Y2B0 182 aa10.9□□□□□ -0.66
VPS52-216ENST00000471309 CNTNAP1P78357 1384 aa10.9□□□□□ -0.67
VPS52-216ENST00000471309 ELP1O95163 1332 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 PRPF3O43395 683 aaKnown RBP10.89□□□□□ -0.67
VPS52-216ENST00000471309 MYO1BO43795 1136 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 PLEKHA8P1O95397 391 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 MBD3O95983 291 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 AKR1B1P15121 316 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 FOSBP53539 338 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 TRIM29Q14134 588 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 ATL3Q6DD88 541 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 TATDN1Q6P1N9 297 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 BRAPQ7Z569 592 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 ZSCAN29Q8IWY8 852 aaPredicted RBP10.89□□□□□ -0.67
VPS52-216ENST00000471309 FAM151AQ8WW52 585 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 DPF2Q92785 391 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 TRIM34Q9BYJ4 488 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 MYOZ2Q9NPC6 264 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 RBM27Q9P2N5 1060 aaKnown RBP10.89□□□□□ -0.67
VPS52-216ENST00000471309 SBF1O95248 1867 aa10.89□□□□□ -0.67
VPS52-216ENST00000471309 FIBPO43427 364 aa10.88□□□□□ -0.67
VPS52-216ENST00000471309 NCLP19338 710 aaKnown RBP10.88□□□□□ -0.67
VPS52-216ENST00000471309 LMNB1P20700 586 aa10.88□□□□□ -0.67
VPS52-216ENST00000471309 GNAQP50148 359 aa10.88□□□□□ -0.67
VPS52-216ENST00000471309 GUCY1B3Q02153 619 aa10.88□□□□□ -0.67
VPS52-216ENST00000471309 KIF23Q02241 960 aaPredicted RBP10.88□□□□□ -0.67
VPS52-216ENST00000471309 FOXD4L6Q3SYB3 417 aaPredicted RBP10.88□□□□□ -0.67
VPS52-216ENST00000471309 KRT40Q6A162 431 aa10.88□□□□□ -0.67
VPS52-216ENST00000471309 FOXD4L3Q6VB84 417 aaPredicted RBP10.88□□□□□ -0.67
VPS52-216ENST00000471309 FAM83AQ86UY5 434 aa10.88□□□□□ -0.67
VPS52-216ENST00000471309 AIFM3Q96NN9 605 aa10.88□□□□□ -0.67
VPS52-216ENST00000471309 LZTS2Q9BRK4 669 aa10.88□□□□□ -0.67
VPS52-216ENST00000471309 SCAND2PQ9GZW5 306 aaPredicted RBP10.88□□□□□ -0.67
VPS52-216ENST00000471309 MTMR4Q9NYA4 1195 aa10.88□□□□□ -0.67
VPS52-216ENST00000471309 HERC5Q9UII4 1024 aaKnown RBP10.88□□□□□ -0.67
VPS52-216ENST00000471309 DDX49Q9Y6V7 483 aaKnown RBP10.88□□□□□ -0.67
VPS52-216ENST00000471309 TCHHQ07283 1943 aa10.88□□□□□ -0.67
VPS52-216ENST00000471309 ZNF541Q9H0D2 1346 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 CLRN2A0PK11 232 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 PALM3A6NDB9 673 aaPredicted RBP10.87□□□□□ -0.67
VPS52-216ENST00000471309 TCP10L2B9ZVM9 353 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 WNT10BO00744 389 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 TTLL1O95922 423 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 GUCY1A2P33402 732 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 GMPSP49915 693 aaPredicted RBP10.87□□□□□ -0.67
VPS52-216ENST00000471309 AKAP17AQ02040 695 aaKnown RBP10.87□□□□□ -0.67
VPS52-216ENST00000471309 OTUD7BQ6GQQ9 843 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 FAM173BQ6P4H8 233 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 USP48Q86UV5 1035 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 CMTR1Q8N1G2 835 aaKnown RBP10.87□□□□□ -0.67
VPS52-216ENST00000471309 SRBD1Q8N5C6 995 aaKnown RBP10.87□□□□□ -0.67
VPS52-216ENST00000471309 ZNF396Q96N95 335 aaPredicted RBP10.87□□□□□ -0.67
VPS52-216ENST00000471309 CSRNP1Q96S65 589 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 GDPD2Q9HCC8 539 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 MAD2L2Q9UI95 211 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 CFAP45Q9UL16 551 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 MYH4Q9Y623 1939 aa10.87□□□□□ -0.67
VPS52-216ENST00000471309 UBE2Q2LH0YL09 131 aa10.86□□□□□ -0.67
VPS52-216ENST00000471309 MMP1P03956 469 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms