RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 USP17L19D6RCP7 530 aa21.18■□□□□ 0.98
COL7A1-208ENST00000470076 USP17L20D6RJB6 530 aa21.18■□□□□ 0.98
COL7A1-208ENST00000470076 SHMT1P34896 483 aa21.18■□□□□ 0.98
COL7A1-208ENST00000470076 FXR1P51114 621 aaKnown RBP eCLIP21.18■□□□□ 0.98
COL7A1-208ENST00000470076 USP17L24Q0WX57 530 aa21.18■□□□□ 0.98
COL7A1-208ENST00000470076 CCAR1Q8IX12 1150 aaKnown RBP21.18■□□□□ 0.98
COL7A1-208ENST00000470076 HMX1Q9NP08 348 aaPredicted RBP21.18■□□□□ 0.98
COL7A1-208ENST00000470076 RPTORQ8N122 1335 aa21.18■□□□□ 0.98
COL7A1-208ENST00000470076 TCRBV5S4A2TA0A5A2 114 aa21.17■□□□□ 0.98
COL7A1-208ENST00000470076 PEX10O60683 326 aa21.17■□□□□ 0.98
COL7A1-208ENST00000470076 XRCC5P13010 732 aaKnown RBP21.17■□□□□ 0.98
COL7A1-208ENST00000470076 PDE3AQ14432 1141 aa21.17■□□□□ 0.98
COL7A1-208ENST00000470076 ZYXQ15942 572 aaKnown RBP21.17■□□□□ 0.98
COL7A1-208ENST00000470076 PAGR1Q9BTK6 254 aa21.17■□□□□ 0.98
COL7A1-208ENST00000470076 MCM9Q9NXL9 1143 aa21.17■□□□□ 0.98
COL7A1-208ENST00000470076 RANBP2P49792 3224 aaKnown RBP21.17■□□□□ 0.98
COL7A1-208ENST00000470076 CYP2B6P20813 491 aa21.16■□□□□ 0.98
COL7A1-208ENST00000470076 GABPAQ06546 454 aa21.16■□□□□ 0.98
COL7A1-208ENST00000470076 Q3C1V9 767 aa21.16■□□□□ 0.98
COL7A1-208ENST00000470076 CHRDL2Q6WN34 429 aa21.16■□□□□ 0.98
COL7A1-208ENST00000470076 TRMT44Q8IYL2 757 aaKnown RBP21.16■□□□□ 0.98
COL7A1-208ENST00000470076 ANKLE1Q8NAG6 615 aa21.16■□□□□ 0.98
COL7A1-208ENST00000470076 TRIB2Q92519 343 aa21.16■□□□□ 0.98
COL7A1-208ENST00000470076 PAG1Q9NWQ8 432 aa21.16■□□□□ 0.98
COL7A1-208ENST00000470076 RABGAP1Q9Y3P9 1069 aa21.16■□□□□ 0.98
COL7A1-208ENST00000470076 ATP5JP18859 108 aa21.15■□□□□ 0.98
COL7A1-208ENST00000470076 VCAM1P19320 739 aa21.15■□□□□ 0.98
COL7A1-208ENST00000470076 TRIM32Q13049 653 aa21.15■□□□□ 0.98
COL7A1-208ENST00000470076 CATSPERGQ6ZRH7 1159 aa21.15■□□□□ 0.98
COL7A1-208ENST00000470076 GPR142Q7Z601 462 aa21.15■□□□□ 0.98
COL7A1-208ENST00000470076 NECAB2Q7Z6G3 386 aa21.15■□□□□ 0.98
COL7A1-208ENST00000470076 ACER1Q8TDN7 264 aa21.15■□□□□ 0.98
COL7A1-208ENST00000470076 PAWRQ96IZ0 340 aaKnown RBP21.15■□□□□ 0.98
COL7A1-208ENST00000470076 BCL11AQ9H165 835 aa21.15■□□□□ 0.98
COL7A1-208ENST00000470076 PORCNQ9H237 461 aa21.15■□□□□ 0.98
COL7A1-208ENST00000470076 DCP1AQ9NPI6 582 aaPredicted RBP21.15■□□□□ 0.98
COL7A1-208ENST00000470076 CCNA1P78396 465 aa21.14■□□□□ 0.97
COL7A1-208ENST00000470076 MAP3K21Q5TCX8 1036 aa21.14■□□□□ 0.97
COL7A1-208ENST00000470076 POTEEQ6S8J3 1075 aa21.14■□□□□ 0.97
COL7A1-208ENST00000470076 PLEKHH3Q7Z736 793 aa21.14■□□□□ 0.97
COL7A1-208ENST00000470076 LCORLQ8N3X6 602 aa21.14■□□□□ 0.97
COL7A1-208ENST00000470076 SDR42E1Q8WUS8 393 aa21.14■□□□□ 0.97
COL7A1-208ENST00000470076 USP6NLQ92738 828 aa21.14■□□□□ 0.97
COL7A1-208ENST00000470076 EDC3Q96F86 508 aaKnown RBP21.14■□□□□ 0.97
COL7A1-208ENST00000470076 BOLA2Q9H3K6 86 aa21.14■□□□□ 0.97
COL7A1-208ENST00000470076 EVI5O60447 810 aa21.13■□□□□ 0.97
COL7A1-208ENST00000470076 GUCY1A2P33402 732 aa21.13■□□□□ 0.97
COL7A1-208ENST00000470076 ADD2P35612 726 aa21.13■□□□□ 0.97
COL7A1-208ENST00000470076 RGS2P41220 211 aa21.13■□□□□ 0.97
COL7A1-208ENST00000470076 MORN1Q5T089 497 aa21.13■□□□□ 0.97
COL7A1-208ENST00000470076 LBX2Q6XYB7 198 aa21.13■□□□□ 0.97
COL7A1-208ENST00000470076 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.13■□□□□ 0.97
COL7A1-208ENST00000470076 CWC22Q9HCG8 908 aaKnown RBP21.13■□□□□ 0.97
COL7A1-208ENST00000470076 GLRX3O76003 335 aaKnown RBP21.12■□□□□ 0.97
COL7A1-208ENST00000470076 PRKAR2AP13861 404 aaKnown RBP21.12■□□□□ 0.97
COL7A1-208ENST00000470076 ZKSCAN1P17029 563 aaPredicted RBP21.12■□□□□ 0.97
COL7A1-208ENST00000470076 SEPT2Q15019 361 aa21.12■□□□□ 0.97
COL7A1-208ENST00000470076 HAUS7Q99871 368 aa21.12■□□□□ 0.97
COL7A1-208ENST00000470076 ARMT1Q9H993 441 aa21.12■□□□□ 0.97
COL7A1-208ENST00000470076 SWAP70Q9UH65 585 aa21.12■□□□□ 0.97
COL7A1-208ENST00000470076 MYH7P12883 1935 aa21.12■□□□□ 0.97
COL7A1-208ENST00000470076 MYH8P13535 1937 aa21.12■□□□□ 0.97
COL7A1-208ENST00000470076 MPHOSPH10O00566 681 aaKnown RBP21.11■□□□□ 0.97
COL7A1-208ENST00000470076 CNMDO75829 334 aa21.11■□□□□ 0.97
COL7A1-208ENST00000470076 APBA2Q99767 749 aa21.11■□□□□ 0.97
COL7A1-208ENST00000470076 LRRCC1Q9C099 1032 aa21.11■□□□□ 0.97
COL7A1-208ENST00000470076 RPAP3Q9H6T3 665 aaPredicted RBP21.11■□□□□ 0.97
COL7A1-208ENST00000470076 ATP8A2Q9NTI2 1148 aa21.11■□□□□ 0.97
COL7A1-208ENST00000470076 RBM27Q9P2N5 1060 aaKnown RBP21.11■□□□□ 0.97
COL7A1-208ENST00000470076 MBD4O95243 580 aa21.1■□□□□ 0.97
COL7A1-208ENST00000470076 EVX2Q03828 476 aa21.1■□□□□ 0.97
COL7A1-208ENST00000470076 TMEM179Q6ZVK1 233 aa21.1■□□□□ 0.97
COL7A1-208ENST00000470076 DIS3LQ8TF46 1054 aaKnown RBP21.1■□□□□ 0.97
COL7A1-208ENST00000470076 NBPF3Q9H094 633 aa21.1■□□□□ 0.97
COL7A1-208ENST00000470076 OGDHLQ9ULD0 1010 aa21.1■□□□□ 0.97
COL7A1-208ENST00000470076 ALPK3Q96L96 1907 aa21.1■□□□□ 0.97
COL7A1-208ENST00000470076 BAZ2AQ9UIF9 1905 aaKnown RBP21.1■□□□□ 0.97
COL7A1-208ENST00000470076 CYP2D6P10635 497 aa21.09■□□□□ 0.97
COL7A1-208ENST00000470076 MAP2K5Q13163 448 aa21.09■□□□□ 0.97
COL7A1-208ENST00000470076 UBE3CQ15386 1083 aa21.09■□□□□ 0.97
COL7A1-208ENST00000470076 PRO3102Q9H379 93 aa21.09■□□□□ 0.97
COL7A1-208ENST00000470076 A0A1W2PRG0 241 aa21.08■□□□□ 0.97
COL7A1-208ENST00000470076 SPDYE16A6NNV3 312 aaPredicted RBP21.08■□□□□ 0.97
COL7A1-208ENST00000470076 PRKAB2O43741 272 aa21.08■□□□□ 0.97
COL7A1-208ENST00000470076 CACNB2Q08289 660 aaPredicted RBP21.08■□□□□ 0.97
COL7A1-208ENST00000470076 CCL14Q16627 93 aa21.08■□□□□ 0.97
COL7A1-208ENST00000470076 C20orf194Q5TEA3 1177 aa21.08■□□□□ 0.97
COL7A1-208ENST00000470076 ZSCAN25Q6NSZ9 544 aa21.08■□□□□ 0.97
COL7A1-208ENST00000470076 AMOTL1Q8IY63 956 aa21.08■□□□□ 0.97
COL7A1-208ENST00000470076 SLC44A5Q8NCS7 719 aa21.08■□□□□ 0.97
COL7A1-208ENST00000470076 BTBD7Q9P203 1132 aa21.08■□□□□ 0.97
COL7A1-208ENST00000470076 SLC15A5A6NIM6 579 aa21.07■□□□□ 0.96
COL7A1-208ENST00000470076 PTPREP23469 700 aa21.07■□□□□ 0.96
COL7A1-208ENST00000470076 MNX1P50219 401 aaPredicted RBP21.07■□□□□ 0.96
COL7A1-208ENST00000470076 COG2Q14746 738 aa21.07■□□□□ 0.96
COL7A1-208ENST00000470076 SLFNL1Q499Z3 407 aa21.07■□□□□ 0.96
COL7A1-208ENST00000470076 WDR78Q5VTH9 848 aa21.07■□□□□ 0.96
COL7A1-208ENST00000470076 DYNLL2Q96FJ2 89 aa21.07■□□□□ 0.96
COL7A1-208ENST00000470076 DDRGK1Q96HY6 314 aa21.07■□□□□ 0.96
COL7A1-208ENST00000470076 HOXC10Q9NYD6 342 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms