RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 ZNF16P17020 682 aaPredicted RBP5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 SNRPNP63162 240 aaKnown RBP5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 TAGLNQ01995 201 aaKnown RBP5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 LMOD3Q0VAK6 560 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 COL9A3Q14050 684 aaPredicted RBP5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 GDF6Q6KF10 455 aaPredicted RBP5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 ZCRB1Q8TBF4 217 aaKnown RBP5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 POP1Q99575 1024 aaKnown RBP5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 BCO2Q9BYV7 579 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 LGR6Q9HBX8 967 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 ABCB6Q9NP58 842 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 MIS18AQ9NYP9 233 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 MKL2Q9ULH7 1088 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 RGPD2P0DJD1 1756 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 COL18A1P39060 1754 aa5.27□□□□□ -1.57
TMEM39A-204ENST00000468545 COL5A2P05997 1499 aaPredicted RBP5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 CRYBG1Q9Y4K1 1723 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 CRB1P82279 1406 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 FAM177BA6PVY3 158 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 E9PSI1 815 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 GNB5O14775 395 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 DAB2P98082 770 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 SLFN5Q08AF3 891 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 VPS72Q15906 364 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 AKAP4Q5JQC9 854 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 MSL1Q68DK7 614 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 LINC00114Q6XXX2 140 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 TMC4Q7Z404 712 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 WFDC8Q8IUA0 241 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 WDR63Q8IWG1 891 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 IFNL2Q8IZJ0 200 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 NGEFQ8N5V2 710 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 GLIS3Q8NEA6 775 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 IL17REQ8NFR9 667 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 BSNDQ8WZ55 320 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 TSR2Q969E8 191 aaKnown RBP5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 LACRTQ9GZZ8 138 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 ADAM19Q9H013 955 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 C12orf49Q9H741 205 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 PARP2Q9UGN5 583 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 SOX13Q9UN79 622 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 LRP6O75581 1613 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 COL22A1Q8NFW1 1626 aaPredicted RBP5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 ABCA3Q99758 1704 aa5.26□□□□□ -1.57
TMEM39A-204ENST00000468545 SPATA31A1Q5TZJ5 1347 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 SPATA31A5Q5VU36 1347 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 SPATA31A7Q8IWB4 1347 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 COL14A1Q05707 1796 aaKnown RBP5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 TMEM238LA0A1B0GVL6 79 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 METTL12A8MUP2 240 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 ELL2O00472 640 aaPredicted RBP5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 CYP27B1O15528 508 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 RNMTO43148 476 aaKnown RBP5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 PHKG2P15735 406 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 EIF4BP23588 611 aaKnown RBP5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 ITPKAP23677 461 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 CDC27P30260 824 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 BAG6P46379 1132 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 GRIA4P48058 902 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 PTPN12Q05209 780 aaKnown RBP5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 CALD1Q05682 793 aaKnown RBP5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 TEFQ10587 303 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 PSMD2Q13200 908 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 SUZ12Q15022 739 aaKnown RBP5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 DDB1Q16531 1140 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 NXPE4Q6UWF7 544 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 ADAMTSL4Q6UY14 1074 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 IL22RA1Q8N6P7 574 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 ASAP3Q8TDY4 903 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 TRIM11Q96F44 468 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 OSBPL7Q9BZF2 842 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 MUC3BQ9H195 1237 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 MYH16Q9H6N6 1097 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 RNF19AQ9NV58 838 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 PPP4R2Q9NY27 417 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 FAM8A1Q9UBU6 413 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 TRPC5Q9UL62 973 aaPredicted RBP5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 KDRP35968 1356 aa5.25□□□□□ -1.57
TMEM39A-204ENST00000468545 MEGF6O75095 1541 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 A0A096LPE4 126 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 A0A1W2PPZ6 126 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 SPDYE3A6NKU9 549 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 HTATSF1O43719 755 aaKnown RBP5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 XRCC5P13010 732 aaKnown RBP5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 EPHA1P21709 976 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 GSTT1P30711 240 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 CABP4P57796 275 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 GNAI1P63096 354 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 EXOSC9Q06265 439 aaKnown RBP5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 TAF7Q15545 349 aaPredicted RBP5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 DTWD1Q8N5C7 304 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 SYTL4Q96C24 671 aaPredicted RBP5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 ACSBG1Q96GR2 724 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 DCAF5Q96JK2 942 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 ZFYVE1Q9HBF4 777 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 SRA1Q9HD15 236 aaKnown RBP5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 NOP53Q9NZM5 478 aaKnown RBP5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 TSPYL4Q9UJ04 414 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 THRAP3Q9Y2W1 955 aaKnown RBP5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 PPME1Q9Y570 386 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms