RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 TAF1DQ9H5J8 278 aaPredicted RBP12.6□□□□□ -0.39
MSX1-202ENST00000468421 TAOK2Q9UL54 1235 aa12.6□□□□□ -0.39
MSX1-202ENST00000468421 GOLGA8AA7E2F4 631 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 MPHOSPH10O00566 681 aaKnown RBP12.59□□□□□ -0.39
MSX1-202ENST00000468421 ZBTB43O43298 467 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 TBC1D12O60347 775 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 CTDNEP1O95476 244 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 GUCY1A2P33402 732 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 DDIT3P35638 169 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 NOVP48745 357 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 DLK2Q6UY11 383 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 DGKHQ86XP1 1220 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 CCDC144CPQ8IYA2 1237 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 TMTC2Q8N394 836 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 CCDC17Q96LX7 622 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 SLC12A7Q9Y666 1083 aa12.59□□□□□ -0.39
MSX1-202ENST00000468421 PHIPQ8WWQ0 1821 aa12.58□□□□□ -0.4
MSX1-202ENST00000468421 IQCA1LA6NCM1 817 aa12.58□□□□□ -0.4
MSX1-202ENST00000468421 ADM5C9JUS6 153 aa12.58□□□□□ -0.4
MSX1-202ENST00000468421 CDC27P30260 824 aa12.58□□□□□ -0.4
MSX1-202ENST00000468421 METAP2P50579 478 aaKnown RBP eCLIP12.58□□□□□ -0.4
MSX1-202ENST00000468421 ABCB5Q2M3G0 1257 aa12.58□□□□□ -0.4
MSX1-202ENST00000468421 CCDC178Q5BJE1 867 aa12.58□□□□□ -0.4
MSX1-202ENST00000468421 RASGRP2Q7LDG7 609 aa12.58□□□□□ -0.4
MSX1-202ENST00000468421 TMEM47Q9BQJ4 181 aa12.58□□□□□ -0.4
MSX1-202ENST00000468421 FAM217BQ9NTX9 383 aaPredicted RBP12.58□□□□□ -0.4
MSX1-202ENST00000468421 MTMR4Q9NYA4 1195 aa12.58□□□□□ -0.4
MSX1-202ENST00000468421 STX8Q9UNK0 236 aa12.58□□□□□ -0.4
MSX1-202ENST00000468421 PPP2R3BQ9Y5P8 575 aa12.58□□□□□ -0.4
MSX1-202ENST00000468421 PHF20L1A8MW92 1017 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 JAK2O60674 1132 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 DDAH1O94760 285 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 GH2P01242 217 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 POTEIP0CG38 1075 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 POTEJP0CG39 1038 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 RCAN1P53805 252 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 TROAPQ12815 778 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 SEPT2Q15019 361 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 EAPPQ56P03 285 aaPredicted RBP12.57□□□□□ -0.4
MSX1-202ENST00000468421 SYNE3Q6ZMZ3 975 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 CATIPQ7Z7H3 387 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 PNMA1Q8ND90 353 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 NSUN7Q8NE18 718 aaKnown RBP12.57□□□□□ -0.4
MSX1-202ENST00000468421 NUP133Q8WUM0 1156 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 DCPSQ96C86 337 aaKnown RBP12.57□□□□□ -0.4
MSX1-202ENST00000468421 KAT14Q9H8E8 782 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.57□□□□□ -0.4
MSX1-202ENST00000468421 FZD1Q9UP38 647 aa12.57□□□□□ -0.4
MSX1-202ENST00000468421 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.57□□□□□ -0.4
MSX1-202ENST00000468421 PTPDC1A2A3K4 754 aa12.56□□□□□ -0.4
MSX1-202ENST00000468421 PPFIA3O75145 1194 aa12.56□□□□□ -0.4
MSX1-202ENST00000468421 TOP1P11387 765 aaKnown RBP12.56□□□□□ -0.4
MSX1-202ENST00000468421 GJB2P29033 226 aa12.56□□□□□ -0.4
MSX1-202ENST00000468421 ADD1P35611 737 aaKnown RBP12.56□□□□□ -0.4
MSX1-202ENST00000468421 NTRK3Q16288 839 aa12.56□□□□□ -0.4
MSX1-202ENST00000468421 RTN1Q16799 776 aa12.56□□□□□ -0.4
MSX1-202ENST00000468421 TMEM179Q6ZVK1 233 aa12.56□□□□□ -0.4
MSX1-202ENST00000468421 LRRC47Q8N1G4 583 aaKnown RBP12.56□□□□□ -0.4
MSX1-202ENST00000468421 SMARCC2Q8TAQ2 1214 aa12.56□□□□□ -0.4
MSX1-202ENST00000468421 ZC3H15Q8WU90 426 aaKnown RBP12.56□□□□□ -0.4
MSX1-202ENST00000468421 ZBTB21Q9ULJ3 1066 aa12.56□□□□□ -0.4
MSX1-202ENST00000468421 SMC3Q9UQE7 1217 aa12.56□□□□□ -0.4
MSX1-202ENST00000468421 TTLL1O95922 423 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 EEF2P13639 858 aaKnown RBP12.55□□□□□ -0.4
MSX1-202ENST00000468421 CAP2P40123 477 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 ICA1Q05084 483 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 RAB3GAP1Q15042 981 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 KRT26Q7Z3Y9 468 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 SIAH1Q8IUQ4 282 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 SULF1Q8IWU6 871 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 FANCBQ8NB91 859 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 RRAGCQ9HB90 399 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 CWC22Q9HCG8 908 aaKnown RBP12.55□□□□□ -0.4
MSX1-202ENST00000468421 CABP5Q9NP86 173 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 NYAP2Q9P242 653 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 CLIP2Q9UDT6 1046 aa12.55□□□□□ -0.4
MSX1-202ENST00000468421 PLEKHA8P1O95397 391 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 CALM1P0DP23 149 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 CALM2P0DP24 149 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 CALM3P0DP25 149 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 INPP5BP32019 993 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 ATP2B2Q01814 1243 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 PKP1Q13835 747 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 GRM4Q14833 912 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 DCAF15Q66K64 600 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 CCDC84Q86UT8 332 aaPredicted RBP12.54□□□□□ -0.4
MSX1-202ENST00000468421 USP48Q86UV5 1035 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 PNMA8AQ86V59 439 aaPredicted RBP12.54□□□□□ -0.4
MSX1-202ENST00000468421 CMTR1Q8N1G2 835 aaKnown RBP12.54□□□□□ -0.4
MSX1-202ENST00000468421 CHMP4CQ96CF2 233 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 DDX11Q96FC9 970 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 LLPHQ9BRT6 129 aaKnown RBP12.54□□□□□ -0.4
MSX1-202ENST00000468421 ZNF341Q9BYN7 854 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 GLIS2Q9BZE0 524 aaPredicted RBP12.54□□□□□ -0.4
MSX1-202ENST00000468421 KANSL2Q9H9L4 492 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 NMRK2Q9NPI5 230 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 ZNF112Q9UJU3 913 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 MTMR7Q9Y216 660 aa12.54□□□□□ -0.4
MSX1-202ENST00000468421 PTPRFP10586 1907 aa12.53□□□□□ -0.4
MSX1-202ENST00000468421 MYH15Q9Y2K3 1946 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms