RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ATP11BQ9Y2G3 1177 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 FLT4P35916 1363 aa7.05□□□□□ -1.28
HMGB1-207ENST00000468384 EDC4Q6P2E9 1401 aaKnown RBP7.04□□□□□ -1.28
HMGB1-207ENST00000468384 ST20-MTHFSA0A0A6YYL1 179 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 TRIM43BA6NCK2 446 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 CFHP08603 1231 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 IL6STP40189 918 aaPredicted RBP7.04□□□□□ -1.28
HMGB1-207ENST00000468384 MTHFSP49914 203 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 TRIM32Q13049 653 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 RAB30Q15771 203 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 NBPF20Q3BBV1 942 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 LEXMQ3ZCV2 418 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 KRT40Q6A162 431 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 APOBEC3FQ8IUX4 373 aaKnown RBP7.04□□□□□ -1.28
HMGB1-207ENST00000468384 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.04□□□□□ -1.28
HMGB1-207ENST00000468384 DCAF11Q8TEB1 546 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 TRIM43Q96BQ3 446 aaPredicted RBP7.04□□□□□ -1.28
HMGB1-207ENST00000468384 UPF3BQ9BZI7 483 aaKnown RBP7.04□□□□□ -1.28
HMGB1-207ENST00000468384 PRDM9Q9NQV7 894 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 MUTYHQ9UIF7 546 aa7.04□□□□□ -1.28
HMGB1-207ENST00000468384 CNTNAP5Q8WYK1 1306 aa7.03□□□□□ -1.28
HMGB1-207ENST00000468384 WNT10BO00744 389 aa7.03□□□□□ -1.28
HMGB1-207ENST00000468384 USP2O75604 605 aaPredicted RBP7.03□□□□□ -1.28
HMGB1-207ENST00000468384 CETPP11597 493 aa7.03□□□□□ -1.28
HMGB1-207ENST00000468384 PUS10Q3MIT2 529 aaKnown RBP7.03□□□□□ -1.28
HMGB1-207ENST00000468384 PTCRAQ6ISU1 281 aaPredicted RBP7.03□□□□□ -1.28
HMGB1-207ENST00000468384 RSBN1LQ6PCB5 846 aaPredicted RBP7.03□□□□□ -1.28
HMGB1-207ENST00000468384 SH3RF1Q7Z6J0 888 aa7.03□□□□□ -1.28
HMGB1-207ENST00000468384 NPM2Q86SE8 214 aaKnown RBP7.03□□□□□ -1.28
HMGB1-207ENST00000468384 DZIP3Q86Y13 1208 aaKnown RBP7.03□□□□□ -1.28
HMGB1-207ENST00000468384 PURBQ96QR8 312 aaKnown RBP7.03□□□□□ -1.28
HMGB1-207ENST00000468384 GMLQ99445 158 aa7.03□□□□□ -1.28
HMGB1-207ENST00000468384 PDLIM7Q9NR12 457 aa7.03□□□□□ -1.28
HMGB1-207ENST00000468384 ANKFY1Q9P2R3 1169 aa7.03□□□□□ -1.28
HMGB1-207ENST00000468384 KCNH4Q9UQ05 1017 aa7.03□□□□□ -1.28
HMGB1-207ENST00000468384 KALRNO60229 2985 aa7.02□□□□□ -1.28
HMGB1-207ENST00000468384 GRXCR2A6NFK2 248 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 RFXAPO00287 272 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 PROS1P07225 676 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 ATXN1P54253 815 aaKnown RBP7.02□□□□□ -1.29
HMGB1-207ENST00000468384 ZP2Q05996 745 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 RING1Q06587 406 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 SLC39A6Q13433 755 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 KMT5BQ4FZB7 885 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 ZMYM1Q5SVZ6 1142 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 CRACR2BQ8N4Y2 399 aaPredicted RBP7.02□□□□□ -1.29
HMGB1-207ENST00000468384 DEFB129Q9H1M3 183 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 SRPK3Q9UPE1 567 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 ZNF652Q9Y2D9 606 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 OTOGLQ3ZCN5 2332 aa7.02□□□□□ -1.29
HMGB1-207ENST00000468384 TNPO2O14787 897 aaKnown RBP7.01□□□□□ -1.29
HMGB1-207ENST00000468384 BCRP11274 1271 aa7.01□□□□□ -1.29
HMGB1-207ENST00000468384 SOWAHCQ53LP3 525 aaPredicted RBP7.01□□□□□ -1.29
HMGB1-207ENST00000468384 LARP1BQ659C4 914 aaKnown RBP7.01□□□□□ -1.29
HMGB1-207ENST00000468384 UBE2ZQ9H832 354 aaPredicted RBP7.01□□□□□ -1.29
HMGB1-207ENST00000468384 ZMIZ1Q9ULJ6 1067 aa7.01□□□□□ -1.29
HMGB1-207ENST00000468384 YBX2Q9Y2T7 364 aaKnown RBP7.01□□□□□ -1.29
HMGB1-207ENST00000468384 LOC400499M0QZD8 3231 aa7.01□□□□□ -1.29
HMGB1-207ENST00000468384 DUOX1Q9NRD9 1551 aa7□□□□□ -1.29
HMGB1-207ENST00000468384 FPGSQ05932 587 aa7□□□□□ -1.29
HMGB1-207ENST00000468384 MAP2K5Q13163 448 aa7□□□□□ -1.29
HMGB1-207ENST00000468384 SUPT20HL1Q3ZLR7 823 aa7□□□□□ -1.29
HMGB1-207ENST00000468384 EPHA10Q5JZY3 1008 aa7□□□□□ -1.29
HMGB1-207ENST00000468384 HDGFL2Q7Z4V5 671 aaPredicted RBP7□□□□□ -1.29
HMGB1-207ENST00000468384 EYA1Q99502 592 aa7□□□□□ -1.29
HMGB1-207ENST00000468384 C1orf115Q9H7X2 142 aa7□□□□□ -1.29
HMGB1-207ENST00000468384 CDHR5Q9HBB8 845 aa7□□□□□ -1.29
HMGB1-207ENST00000468384 PODXL2Q9NZ53 605 aa7□□□□□ -1.29
HMGB1-207ENST00000468384 SH3TC1Q8TE82 1336 aa7□□□□□ -1.29
HMGB1-207ENST00000468384 COL4A4P53420 1690 aaPredicted RBP7□□□□□ -1.29
HMGB1-207ENST00000468384 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.99□□□□□ -1.29
HMGB1-207ENST00000468384 BBOX1O75936 387 aa6.99□□□□□ -1.29
HMGB1-207ENST00000468384 SASH1O94885 1247 aa6.99□□□□□ -1.29
HMGB1-207ENST00000468384 RASIP1Q5U651 963 aa6.99□□□□□ -1.29
HMGB1-207ENST00000468384 PPP2R2DQ66LE6 453 aa6.99□□□□□ -1.29
HMGB1-207ENST00000468384 ZNF530Q6P9A1 599 aaPredicted RBP6.99□□□□□ -1.29
HMGB1-207ENST00000468384 PARP9Q8IXQ6 854 aa6.99□□□□□ -1.29
HMGB1-207ENST00000468384 FAM160A2Q8N612 972 aaPredicted RBP6.99□□□□□ -1.29
HMGB1-207ENST00000468384 ADAM32Q8TC27 787 aa6.99□□□□□ -1.29
HMGB1-207ENST00000468384 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.99□□□□□ -1.29
HMGB1-207ENST00000468384 FBN2P35556 2912 aa6.99□□□□□ -1.29
HMGB1-207ENST00000468384 ABCC4O15439 1325 aa6.99□□□□□ -1.29
HMGB1-207ENST00000468384 NOTCH2Q04721 2471 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 PDHXO00330 501 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 IRF6O14896 467 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 SDHBP21912 280 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 KCNA5P22460 613 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 SNAPC2Q13487 334 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 AMHR2Q16671 573 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.98□□□□□ -1.29
HMGB1-207ENST00000468384 DDRGK1Q96HY6 314 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 NYXQ9GZU5 481 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 PRKAG3Q9UGI9 489 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 ANGPTL2Q9UKU9 493 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 MGAMO43451 1857 aa6.98□□□□□ -1.29
HMGB1-207ENST00000468384 SCN9AQ15858 1988 aa6.97□□□□□ -1.29
HMGB1-207ENST00000468384 DCDC2BA2VCK2 349 aa6.97□□□□□ -1.29
HMGB1-207ENST00000468384 A1BGP04217 495 aa6.97□□□□□ -1.29
HMGB1-207ENST00000468384 FECHP22830 423 aa6.97□□□□□ -1.29
HMGB1-207ENST00000468384 TRIM60Q495X7 471 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms