RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 DDX60LQ5H9U9 1706 aaKnown RBP23.83■■□□□ 1.41
NPHP4-206ENST00000468253 FKTNO75072 461 aa23.82■■□□□ 1.4
NPHP4-206ENST00000468253 RASA1P20936 1047 aa23.82■■□□□ 1.4
NPHP4-206ENST00000468253 HOXA7P31268 230 aaPredicted RBP23.82■■□□□ 1.4
NPHP4-206ENST00000468253 MTMR2Q13614 643 aa23.82■■□□□ 1.4
NPHP4-206ENST00000468253 ZNF296Q8WUU4 475 aaPredicted RBP23.82■■□□□ 1.4
NPHP4-206ENST00000468253 C12orf42Q96LP6 360 aa23.82■■□□□ 1.4
NPHP4-206ENST00000468253 RAD50Q92878 1312 aa23.82■■□□□ 1.4
NPHP4-206ENST00000468253 LAMB1P07942 1786 aa23.81■■□□□ 1.4
NPHP4-206ENST00000468253 COL13A1Q5TAT6 717 aaPredicted RBP23.81■■□□□ 1.4
NPHP4-206ENST00000468253 SIAH1Q8IUQ4 282 aa23.81■■□□□ 1.4
NPHP4-206ENST00000468253 PARK7Q99497 189 aaKnown RBP23.81■■□□□ 1.4
NPHP4-206ENST00000468253 EMILIN3Q9NT22 766 aa23.81■■□□□ 1.4
NPHP4-206ENST00000468253 DOCK1Q14185 1865 aa23.81■■□□□ 1.4
NPHP4-206ENST00000468253 PCP11498 1178 aaKnown RBP23.8■■□□□ 1.4
NPHP4-206ENST00000468253 C17orf99Q6UX52 265 aa23.8■■□□□ 1.4
NPHP4-206ENST00000468253 NAV1Q8NEY1 1877 aa23.8■■□□□ 1.4
NPHP4-206ENST00000468253 ACER1Q8TDN7 264 aa23.8■■□□□ 1.4
NPHP4-206ENST00000468253 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.8■■□□□ 1.4
NPHP4-206ENST00000468253 CTNNA3Q9UI47 895 aa23.8■■□□□ 1.4
NPHP4-206ENST00000468253 PNMA3Q9UL41 463 aa23.8■■□□□ 1.4
NPHP4-206ENST00000468253 NT5C2P49902 561 aa23.79■■□□□ 1.4
NPHP4-206ENST00000468253 SP3Q02447 781 aa23.79■■□□□ 1.4
NPHP4-206ENST00000468253 SH2D4AQ9H788 454 aa23.79■■□□□ 1.4
NPHP4-206ENST00000468253 ARHGEF10LQ9HCE6 1279 aa23.79■■□□□ 1.4
NPHP4-206ENST00000468253 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.79■■□□□ 1.4
NPHP4-206ENST00000468253 TMX2Q9Y320 296 aa23.79■■□□□ 1.4
NPHP4-206ENST00000468253 ORC4O43929 436 aa23.78■■□□□ 1.4
NPHP4-206ENST00000468253 OSBPP22059 807 aa23.78■■□□□ 1.4
NPHP4-206ENST00000468253 TREML2Q5T2D2 321 aa23.78■■□□□ 1.4
NPHP4-206ENST00000468253 NEDD1Q8NHV4 660 aa23.78■■□□□ 1.4
NPHP4-206ENST00000468253 BAZ2AQ9UIF9 1905 aaKnown RBP23.77■■□□□ 1.4
NPHP4-206ENST00000468253 A0A1W2PRG0 241 aa23.77■■□□□ 1.4
NPHP4-206ENST00000468253 SGSM2O43147 1006 aa23.77■■□□□ 1.4
NPHP4-206ENST00000468253 ICA1Q05084 483 aa23.77■■□□□ 1.4
NPHP4-206ENST00000468253 STK11IPQ8N1F8 1099 aa23.77■■□□□ 1.4
NPHP4-206ENST00000468253 FEZ1Q99689 392 aa23.77■■□□□ 1.4
NPHP4-206ENST00000468253 NYAP2Q9P242 653 aa23.77■■□□□ 1.4
NPHP4-206ENST00000468253 IGKV6D-41A0A0C4DH26 115 aa23.76■■□□□ 1.39
NPHP4-206ENST00000468253 ZNF213O14771 459 aa23.76■■□□□ 1.39
NPHP4-206ENST00000468253 PRDM1O75626 825 aa23.76■■□□□ 1.39
NPHP4-206ENST00000468253 CTDSPL2Q05D32 466 aa23.76■■□□□ 1.39
NPHP4-206ENST00000468253 ARHGEF6Q15052 776 aa23.76■■□□□ 1.39
NPHP4-206ENST00000468253 PPP4R3BQ5MIZ7 849 aa23.76■■□□□ 1.39
NPHP4-206ENST00000468253 MKL1Q969V6 931 aa23.76■■□□□ 1.39
NPHP4-206ENST00000468253 ERO1AQ96HE7 468 aa23.76■■□□□ 1.39
NPHP4-206ENST00000468253 SYNPO2Q9UMS6 1093 aa23.76■■□□□ 1.39
NPHP4-206ENST00000468253 ADGRA2Q96PE1 1338 aa23.76■■□□□ 1.39
NPHP4-206ENST00000468253 PHIPQ8WWQ0 1821 aa23.75■■□□□ 1.39
NPHP4-206ENST00000468253 CYP2C8P10632 490 aa23.75■■□□□ 1.39
NPHP4-206ENST00000468253 EEF2P13639 858 aaKnown RBP23.75■■□□□ 1.39
NPHP4-206ENST00000468253 GCLCP48506 637 aaPredicted RBP23.75■■□□□ 1.39
NPHP4-206ENST00000468253 TFAP4Q01664 338 aa23.75■■□□□ 1.39
NPHP4-206ENST00000468253 SKAP1Q86WV1 359 aa23.75■■□□□ 1.39
NPHP4-206ENST00000468253 LPAR1Q92633 364 aa23.75■■□□□ 1.39
NPHP4-206ENST00000468253 IL25Q9H293 177 aa23.75■■□□□ 1.39
NPHP4-206ENST00000468253 RNF41Q9H4P4 317 aaPredicted RBP23.75■■□□□ 1.39
NPHP4-206ENST00000468253 USP17L15C9J2P7 530 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 USP17L13C9JLJ4 530 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 USP17L11C9JVI0 530 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 USP17L18D6R9N7 530 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 USP17L22D6RA61 530 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 USP17L17D6RBQ6 530 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 USP17L19D6RCP7 530 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 USP17L20D6RJB6 530 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 TSPY3P0CV98 308 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 TSPY8P0CW00 308 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 USP17L24Q0WX57 530 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 PKN2Q16513 984 aaKnown RBP23.74■■□□□ 1.39
NPHP4-206ENST00000468253 AKNAD1Q5T1N1 836 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 ASCC2Q9H1I8 757 aaPredicted RBP23.74■■□□□ 1.39
NPHP4-206ENST00000468253 MTMR4Q9NYA4 1195 aa23.74■■□□□ 1.39
NPHP4-206ENST00000468253 BCRP11274 1271 aa23.73■■□□□ 1.39
NPHP4-206ENST00000468253 DGKZQ13574 1117 aa23.73■■□□□ 1.39
NPHP4-206ENST00000468253 CATSPERGQ6ZRH7 1159 aa23.73■■□□□ 1.39
NPHP4-206ENST00000468253 MFSD6Q6ZSS7 791 aa23.73■■□□□ 1.39
NPHP4-206ENST00000468253 CTU1Q7Z7A3 348 aaKnown RBP23.73■■□□□ 1.39
NPHP4-206ENST00000468253 STAG1Q8WVM7 1258 aa23.73■■□□□ 1.39
NPHP4-206ENST00000468253 VCPKMTQ9H867 229 aa23.73■■□□□ 1.39
NPHP4-206ENST00000468253 IRX3P78415 501 aaPredicted RBP23.72■■□□□ 1.39
NPHP4-206ENST00000468253 IMMTQ16891 758 aaKnown RBP23.72■■□□□ 1.39
NPHP4-206ENST00000468253 SMCR8Q8TEV9 937 aaPredicted RBP23.72■■□□□ 1.39
NPHP4-206ENST00000468253 GTF3C2Q8WUA4 911 aaPredicted RBP23.72■■□□□ 1.39
NPHP4-206ENST00000468253 P2RX7Q99572 595 aaKnown RBP23.72■■□□□ 1.39
NPHP4-206ENST00000468253 INCENPQ9NQS7 918 aa23.72■■□□□ 1.39
NPHP4-206ENST00000468253 TCP11L1Q9NUJ3 509 aa23.72■■□□□ 1.39
NPHP4-206ENST00000468253 CPA4Q9UI42 421 aa23.72■■□□□ 1.39
NPHP4-206ENST00000468253 TACC3Q9Y6A5 838 aa23.72■■□□□ 1.39
NPHP4-206ENST00000468253 PLIN4Q96Q06 1357 aa23.72■■□□□ 1.39
NPHP4-206ENST00000468253 TTLL1O95922 423 aa23.71■■□□□ 1.39
NPHP4-206ENST00000468253 VCAM1P19320 739 aa23.71■■□□□ 1.39
NPHP4-206ENST00000468253 FAM47AQ5JRC9 791 aa23.71■■□□□ 1.39
NPHP4-206ENST00000468253 MAP4K1Q92918 833 aa23.71■■□□□ 1.39
NPHP4-206ENST00000468253 HOXC10Q9NYD6 342 aa23.71■■□□□ 1.39
NPHP4-206ENST00000468253 U3KPZ7 1027 aaPredicted RBP23.71■■□□□ 1.39
NPHP4-206ENST00000468253 TSPY2A6NKD2 308 aa23.7■■□□□ 1.38
NPHP4-206ENST00000468253 RANBP6O60518 1105 aaKnown RBP23.7■■□□□ 1.38
NPHP4-206ENST00000468253 GNRH1P01148 92 aa23.7■■□□□ 1.38
NPHP4-206ENST00000468253 NOVP48745 357 aa23.7■■□□□ 1.38
NPHP4-206ENST00000468253 HAND2P61296 217 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms