RNA–Protein interactions for RNA: ENST00000468136.5

MSH5-213, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-213ENST00000468136 SPTLC2O15270 562 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 RXRAP19793 462 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 TRAPPC10P48553 1259 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 PLCD1P51178 756 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 SLC39A14Q15043 492 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 FAM47AQ5JRC9 791 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 FKBP1CQ5VVH2 108 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 RCSD1Q6JBY9 416 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 CDC42EP5Q6NZY7 148 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 NOSTRINQ8IVI9 506 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 CCDC144CPQ8IYA2 1237 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 AGBL3Q8NEM8 1001 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 CCDC148Q8NFR7 591 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 NKX2-3Q8TAU0 364 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 CCDC12Q8WUD4 166 aaPredicted RBP11.76□□□□□ -0.53
MSH5-213ENST00000468136 USP28Q96RU2 1077 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 MYL10Q9BUA6 226 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.76□□□□□ -0.53
MSH5-213ENST00000468136 NUP62CLQ9H1M0 184 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 TMOD2Q9NZR1 351 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 PI4KBQ9UBF8 816 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 SYNPO2Q9UMS6 1093 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 CD2APQ9Y5K6 639 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 EP400Q96L91 3159 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 FOCADQ5VW36 1801 aa11.76□□□□□ -0.53
MSH5-213ENST00000468136 C21orf2O43822 256 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 VIL1P09327 827 aaKnown RBP11.75□□□□□ -0.53
MSH5-213ENST00000468136 CCDC192P0DO97 292 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 KRT2P35908 639 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 GUCY1B3Q02153 619 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 MAP3K11Q16584 847 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 AOC3Q16853 763 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 RSBN1LQ6PCB5 846 aaPredicted RBP11.75□□□□□ -0.53
MSH5-213ENST00000468136 RAB11FIP4Q86YS3 637 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 DIS3L2Q8IYB7 885 aaKnown RBP11.75□□□□□ -0.53
MSH5-213ENST00000468136 STK11IPQ8N1F8 1099 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 OGFOD1Q8N543 542 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 CHAMP1Q96JM3 812 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 SPZ1Q9BXG8 430 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 IL17RBQ9NRM6 502 aa11.75□□□□□ -0.53
MSH5-213ENST00000468136 SAP30BPQ9UHR5 308 aaKnown RBP11.75□□□□□ -0.53
MSH5-213ENST00000468136 NOL7Q9UMY1 257 aaKnown RBP11.75□□□□□ -0.53
MSH5-213ENST00000468136 SYCE3A1L190 88 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 PALM3A6NDB9 673 aaPredicted RBP11.74□□□□□ -0.53
MSH5-213ENST00000468136 KINO60870 393 aaKnown RBP11.74□□□□□ -0.53
MSH5-213ENST00000468136 XRCC6P12956 609 aaKnown RBP eCLIP11.74□□□□□ -0.53
MSH5-213ENST00000468136 SCG2P13521 617 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 DPEP1P16444 411 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 ME1P48163 572 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 FAM160A1Q05DH4 1040 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 PFKFB3Q16875 520 aaPredicted RBP11.74□□□□□ -0.53
MSH5-213ENST00000468136 ASPRV1Q53RT3 343 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 DALRD3Q5D0E6 543 aaKnown RBP11.74□□□□□ -0.53
MSH5-213ENST00000468136 FAM173BQ6P4H8 233 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 OLFM4Q6UX06 510 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 RBM43Q6ZSC3 357 aaKnown RBP11.74□□□□□ -0.53
MSH5-213ENST00000468136 ILDR1Q86SU0 546 aaPredicted RBP11.74□□□□□ -0.53
MSH5-213ENST00000468136 SLC51AQ86UW1 340 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 METTL16Q86W50 562 aaKnown RBP11.74□□□□□ -0.53
MSH5-213ENST00000468136 NIM1KQ8IY84 436 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 LARGE2Q8N3Y3 721 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 MTMR14Q8NCE2 650 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 MRPS27Q92552 414 aaKnown RBP11.74□□□□□ -0.53
MSH5-213ENST00000468136 DYNLL2Q96FJ2 89 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 CCDC34Q96HJ3 373 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 TMEM47Q9BQJ4 181 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 PHF20Q9BVI0 1012 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 TRIM34Q9BYJ4 488 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 CLSTN2Q9H4D0 955 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 ZNRF3Q9ULT6 936 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 CNTNAP5Q8WYK1 1306 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 MYH1P12882 1939 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 MYH15Q9Y2K3 1946 aa11.74□□□□□ -0.53
MSH5-213ENST00000468136 IGKV6D-41A0A0C4DH26 115 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 F8W031 263 aaPredicted RBP11.73□□□□□ -0.53
MSH5-213ENST00000468136 CUTAO60888 179 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 TTLL1O95922 423 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 PARP1P09874 1014 aaKnown RBP11.73□□□□□ -0.53
MSH5-213ENST00000468136 KCNA3P22001 575 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 CMA1P23946 247 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 HOXD11P31277 338 aaPredicted RBP11.73□□□□□ -0.53
MSH5-213ENST00000468136 CCDC173Q0VFZ6 552 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 PKN1Q16512 942 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 ATRNL1Q5VV63 1379 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 KIAA0825Q8IV33 1275 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 TEX2Q8IWB9 1127 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 ELOA2Q8IYF1 753 aaPredicted RBP11.73□□□□□ -0.53
MSH5-213ENST00000468136 ZNF579Q8NAF0 562 aaKnown RBP11.73□□□□□ -0.53
MSH5-213ENST00000468136 PGBD1Q96JS3 809 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 TIGD1Q96MW7 591 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 TNMDQ9H2S6 317 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 LTBP3Q9NS15 1303 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 MTMR4Q9NYA4 1195 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 STX8Q9UNK0 236 aa11.73□□□□□ -0.53
MSH5-213ENST00000468136 V9GY48 417 aaPredicted RBP11.73□□□□□ -0.53
MSH5-213ENST00000468136 CDK5RAP2Q96SN8 1893 aa11.72□□□□□ -0.53
MSH5-213ENST00000468136 FAM237AA0A1B0GTK4 181 aa11.72□□□□□ -0.53
MSH5-213ENST00000468136 RPS12P25398 132 aaKnown RBP11.72□□□□□ -0.53
MSH5-213ENST00000468136 SCNN1DP51172 638 aa11.72□□□□□ -0.53
MSH5-213ENST00000468136 RBM5P52756 815 aaKnown RBP eCLIP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms