RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	NAV1	Q8NEY1	1877 aa		13.65	□□□□□ -0.22
PTPN7-204	ENST00000462815	HLA-DOA	P06340	250 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	ZKSCAN1	P17029	563 aa	Predicted RBP	13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	SYN1	P17600	705 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	SHMT1	P34896	483 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	MAGEA10	P43363	369 aa	Predicted RBP	13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	GABPA	Q06546	454 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	LRIT3	Q3SXY7	679 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	CATSPERG	Q6ZRH7	1159 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	PLEKHH3	Q7Z736	793 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	ACER1	Q8TDN7	264 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	APBA2	Q99767	749 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	KIAA1683	Q9H0B3	1180 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	SERPINB13	Q9UIV8	391 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	RABGAP1	Q9Y3P9	1069 aa		13.64	□□□□□ -0.23
PTPN7-204	ENST00000462815	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	IDH1	O75874	414 aa	Known RBP	13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	VCAM1	P19320	739 aa		13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	RGS2	P41220	211 aa		13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	PLCD1	P51178	756 aa		13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	OS9	Q13438	667 aa	Predicted RBP	13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	LRRC26	Q2I0M4	334 aa		13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	GPR153	Q6NV75	609 aa		13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	TRMT44	Q8IYL2	757 aa	Known RBP	13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	MAGEB6	Q8N7X4	407 aa		13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	PAGR1	Q9BTK6	254 aa		13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	BTBD7	Q9P203	1132 aa		13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	CDH23	Q9H251	3354 aa		13.63	□□□□□ -0.23
PTPN7-204	ENST00000462815	VCAN	P13611	3396 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	USP17L15	C9J2P7	530 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	USP17L13	C9JLJ4	530 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	USP17L11	C9JVI0	530 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	USP17L18	D6R9N7	530 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	USP17L22	D6RA61	530 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	USP17L17	D6RBQ6	530 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	USP17L19	D6RCP7	530 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	USP17L20	D6RJB6	530 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	DLL1	O00548	723 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	HOXC6	P09630	235 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	USP17L24	Q0WX57	530 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	MAP2K5	Q13163	448 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	PDE3A	Q14432	1141 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	GRB14	Q14449	540 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	ZYX	Q15942	572 aa	Known RBP	13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	TMED8	Q6PL24	325 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	CERS3	Q8IU89	383 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	TRIM34	Q9BYJ4	488 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815	PRUNE2	Q8WUY3	3088 aa		13.62	□□□□□ -0.23
PTPN7-204	ENST00000462815		A0A1W2PRG0	241 aa		13.61	□□□□□ -0.23
PTPN7-204	ENST00000462815	PTPRE	P23469	700 aa		13.61	□□□□□ -0.23
PTPN7-204	ENST00000462815	TDH	Q8IZJ6	230 aa		13.61	□□□□□ -0.23
PTPN7-204	ENST00000462815	TRPV1	Q8NER1	839 aa		13.61	□□□□□ -0.23
PTPN7-204	ENST00000462815	EXOC6B	Q9Y2D4	811 aa		13.61	□□□□□ -0.23
PTPN7-204	ENST00000462815	LTBP2	Q14767	1821 aa		13.61	□□□□□ -0.23
PTPN7-204	ENST00000462815	PARP14	Q460N5	1801 aa		13.6	□□□□□ -0.23
PTPN7-204	ENST00000462815	TCRBV5S4A2T	A0A5A2	114 aa		13.6	□□□□□ -0.23
PTPN7-204	ENST00000462815	SLC15A5	A6NIM6	579 aa		13.6	□□□□□ -0.23
PTPN7-204	ENST00000462815	USP5	P45974	858 aa		13.6	□□□□□ -0.23
PTPN7-204	ENST00000462815	USP14	P54578	494 aa		13.6	□□□□□ -0.23
PTPN7-204	ENST00000462815	ABCB5	Q2M3G0	1257 aa		13.6	□□□□□ -0.23
PTPN7-204	ENST00000462815	CERKL	Q49MI3	558 aa	Predicted RBP	13.6	□□□□□ -0.23
PTPN7-204	ENST00000462815	KIAA1755	Q5JYT7	1200 aa		13.6	□□□□□ -0.23
PTPN7-204	ENST00000462815		Q7L0L9	218 aa		13.6	□□□□□ -0.23
PTPN7-204	ENST00000462815	ITPRIP	Q8IWB1	547 aa		13.6	□□□□□ -0.23
PTPN7-204	ENST00000462815	NPLOC4	Q8TAT6	608 aa		13.6	□□□□□ -0.23
PTPN7-204	ENST00000462815	PDE6A	P16499	860 aa		13.59	□□□□□ -0.23
PTPN7-204	ENST00000462815	MAP3K12	Q12852	859 aa		13.59	□□□□□ -0.23
PTPN7-204	ENST00000462815	RAB3GAP1	Q15042	981 aa		13.59	□□□□□ -0.23
PTPN7-204	ENST00000462815	TTC6	Q86TZ1	520 aa		13.59	□□□□□ -0.23
PTPN7-204	ENST00000462815	EDC3	Q96F86	508 aa	Known RBP	13.59	□□□□□ -0.23
PTPN7-204	ENST00000462815	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.59	□□□□□ -0.23
PTPN7-204	ENST00000462815	CYBA	P13498	195 aa		13.58	□□□□□ -0.24
PTPN7-204	ENST00000462815	SEPT2	Q15019	361 aa		13.58	□□□□□ -0.24
PTPN7-204	ENST00000462815	AACS	Q86V21	672 aa		13.58	□□□□□ -0.24
PTPN7-204	ENST00000462815	SIAH1	Q8IUQ4	282 aa		13.58	□□□□□ -0.24
PTPN7-204	ENST00000462815	FTSJ3	Q8IY81	847 aa	Known RBP	13.58	□□□□□ -0.24
PTPN7-204	ENST00000462815	FEZ1	Q99689	392 aa		13.58	□□□□□ -0.24
PTPN7-204	ENST00000462815	MTMR10	Q9NXD2	777 aa		13.58	□□□□□ -0.24
PTPN7-204	ENST00000462815	DDX20	Q9UHI6	824 aa	Known RBP	13.58	□□□□□ -0.24
PTPN7-204	ENST00000462815	CCNA1	P78396	465 aa		13.57	□□□□□ -0.24
PTPN7-204	ENST00000462815	SIRT2	Q8IXJ6	389 aa		13.57	□□□□□ -0.24
PTPN7-204	ENST00000462815	DEFB123	Q8N688	67 aa		13.57	□□□□□ -0.24
PTPN7-204	ENST00000462815	RHPN1	Q8TCX5	695 aa		13.57	□□□□□ -0.24
PTPN7-204	ENST00000462815	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
PTPN7-204	ENST00000462815	MOV10L1	Q9BXT6	1211 aa	Known RBP	13.57	□□□□□ -0.24
PTPN7-204	ENST00000462815	IL1RAPL2	Q9NP60	686 aa		13.57	□□□□□ -0.24
PTPN7-204	ENST00000462815	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.57	□□□□□ -0.24
PTPN7-204	ENST00000462815	CUL9	Q8IWT3	2517 aa		13.56	□□□□□ -0.24
PTPN7-204	ENST00000462815	MAGEB6P1	A0A0J9YX57	407 aa		13.56	□□□□□ -0.24
PTPN7-204	ENST00000462815	SMIM22	K7EJ46	135 aa		13.56	□□□□□ -0.24
PTPN7-204	ENST00000462815	CYP2D6	P10635	497 aa		13.56	□□□□□ -0.24
PTPN7-204	ENST00000462815	CYP2C19	P33261	490 aa		13.56	□□□□□ -0.24
PTPN7-204	ENST00000462815	ERC1	Q8IUD2	1116 aa		13.56	□□□□□ -0.24
PTPN7-204	ENST00000462815	LCORL	Q8N3X6	602 aa		13.56	□□□□□ -0.24
PTPN7-204	ENST00000462815	SLC44A5	Q8NCS7	719 aa		13.56	□□□□□ -0.24
PTPN7-204	ENST00000462815	PANK1	Q8TE04	598 aa		13.56	□□□□□ -0.24
PTPN7-204	ENST00000462815	SDR42E1	Q8WUS8	393 aa		13.56	□□□□□ -0.24
PTPN7-204	ENST00000462815	LPAR1	Q92633	364 aa		13.56	□□□□□ -0.24
PTPN7-204	ENST00000462815	UBE2O	Q9C0C9	1292 aa	Known RBP	13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms