RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 TAF1CQ15572 869 aaPredicted RBP27.14■■□□□ 1.94
CCDC28B-203ENST00000461819 CASC1Q6TDU7 716 aa27.14■■□□□ 1.94
CCDC28B-203ENST00000461819 TMOD4Q9NZQ9 345 aa27.14■■□□□ 1.94
CCDC28B-203ENST00000461819 C19orf81C9J6K1 198 aa27.13■■□□□ 1.93
CCDC28B-203ENST00000461819 PDHXO00330 501 aa27.13■■□□□ 1.93
CCDC28B-203ENST00000461819 ZYXQ15942 572 aaKnown RBP27.13■■□□□ 1.93
CCDC28B-203ENST00000461819 PROCA1Q8NCQ7 364 aaPredicted RBP27.13■■□□□ 1.93
CCDC28B-203ENST00000461819 MYH4Q9Y623 1939 aa27.13■■□□□ 1.93
CCDC28B-203ENST00000461819 CDC45O75419 566 aa27.12■■□□□ 1.93
CCDC28B-203ENST00000461819 ICA1Q05084 483 aa27.12■■□□□ 1.93
CCDC28B-203ENST00000461819 CRHR2Q13324 411 aa27.12■■□□□ 1.93
CCDC28B-203ENST00000461819 DGKZQ13574 1117 aa27.12■■□□□ 1.93
CCDC28B-203ENST00000461819 CLEC10AQ8IUN9 316 aa27.12■■□□□ 1.93
CCDC28B-203ENST00000461819 CFHR5Q9BXR6 569 aa27.12■■□□□ 1.93
CCDC28B-203ENST00000461819 TOMM22Q9NS69 142 aa27.12■■□□□ 1.93
CCDC28B-203ENST00000461819 CTNNA3Q9UI47 895 aa27.12■■□□□ 1.93
CCDC28B-203ENST00000461819 CASP8AP2Q9UKL3 1982 aa27.11■■□□□ 1.93
CCDC28B-203ENST00000461819 ZNF213O14771 459 aa27.11■■□□□ 1.93
CCDC28B-203ENST00000461819 SH3D19Q5HYK7 790 aa27.11■■□□□ 1.93
CCDC28B-203ENST00000461819 GPAT2Q6NUI2 795 aa27.11■■□□□ 1.93
CCDC28B-203ENST00000461819 ACER1Q8TDN7 264 aa27.11■■□□□ 1.93
CCDC28B-203ENST00000461819 ZFYVE28Q9HCC9 887 aa27.11■■□□□ 1.93
CCDC28B-203ENST00000461819 ARHGEF10LQ9HCE6 1279 aa27.11■■□□□ 1.93
CCDC28B-203ENST00000461819 AGTPBP1Q9UPW5 1226 aa27.11■■□□□ 1.93
CCDC28B-203ENST00000461819 TSPY3P0CV98 308 aa27.1■■□□□ 1.93
CCDC28B-203ENST00000461819 TSPY8P0CW00 308 aa27.1■■□□□ 1.93
CCDC28B-203ENST00000461819 USP14P54578 494 aa27.1■■□□□ 1.93
CCDC28B-203ENST00000461819 ATP2B2Q01814 1243 aa27.1■■□□□ 1.93
CCDC28B-203ENST00000461819 IMMTQ16891 758 aaKnown RBP27.1■■□□□ 1.93
CCDC28B-203ENST00000461819 USP17L2Q6R6M4 530 aa27.1■■□□□ 1.93
CCDC28B-203ENST00000461819 ESYT1Q9BSJ8 1104 aa27.1■■□□□ 1.93
CCDC28B-203ENST00000461819 KANSL2Q9H9L4 492 aa27.1■■□□□ 1.93
CCDC28B-203ENST00000461819 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.1■■□□□ 1.93
CCDC28B-203ENST00000461819 TREML2Q5T2D2 321 aa27.09■■□□□ 1.93
CCDC28B-203ENST00000461819 KIAA1211Q6ZU35 1233 aa27.09■■□□□ 1.93
CCDC28B-203ENST00000461819 KIAA1683Q9H0B3 1180 aa27.09■■□□□ 1.93
CCDC28B-203ENST00000461819 R3HDMLQ9H3Y0 253 aa27.09■■□□□ 1.93
CCDC28B-203ENST00000461819 SH2D4AQ9H788 454 aa27.09■■□□□ 1.93
CCDC28B-203ENST00000461819 PTH1RQ03431 593 aa27.08■■□□□ 1.93
CCDC28B-203ENST00000461819 PABPC4Q13310 644 aaKnown RBP eCLIP27.08■■□□□ 1.932e-6■■■■□ 22.3
CCDC28B-203ENST00000461819 FAM47AQ5JRC9 791 aa27.08■■□□□ 1.93
CCDC28B-203ENST00000461819 RRP12Q5JTH9 1297 aaKnown RBP27.08■■□□□ 1.93
CCDC28B-203ENST00000461819 PARK7Q99497 189 aaKnown RBP27.08■■□□□ 1.93
CCDC28B-203ENST00000461819 RNF41Q9H4P4 317 aaPredicted RBP27.08■■□□□ 1.93
CCDC28B-203ENST00000461819 INCENPQ9NQS7 918 aa27.08■■□□□ 1.93
CCDC28B-203ENST00000461819 SLC45A1Q9Y2W3 748 aa27.08■■□□□ 1.93
CCDC28B-203ENST00000461819 PLIN4Q96Q06 1357 aa27.08■■□□□ 1.93
CCDC28B-203ENST00000461819 TSPY2A6NKD2 308 aa27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 ORC4O43929 436 aa27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 RANBP6O60518 1105 aaKnown RBP27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 TFAP4Q01664 338 aa27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 AKNAD1Q5T1N1 836 aa27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 MFSD6Q6ZSS7 791 aa27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 TBC1D10CQ8IV04 446 aa27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 NBPF3Q9H094 633 aa27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 PRDM10Q9NQV6 1147 aa27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 EMILIN3Q9NT22 766 aa27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 PNMA3Q9UL41 463 aa27.07■■□□□ 1.92
CCDC28B-203ENST00000461819 A0A1W2PRG0 241 aa27.06■■□□□ 1.92
CCDC28B-203ENST00000461819 PCP11498 1178 aaKnown RBP27.06■■□□□ 1.92
CCDC28B-203ENST00000461819 EEF2P13639 858 aaKnown RBP27.06■■□□□ 1.92
CCDC28B-203ENST00000461819 STAG1Q8WVM7 1258 aa27.06■■□□□ 1.92
CCDC28B-203ENST00000461819 TACC3Q9Y6A5 838 aa27.06■■□□□ 1.92
CCDC28B-203ENST00000461819 U3KPZ7 1027 aaPredicted RBP27.06■■□□□ 1.92
CCDC28B-203ENST00000461819 GPR25O00155 361 aa27.05■■□□□ 1.92
CCDC28B-203ENST00000461819 NEDD1Q8NHV4 660 aa27.05■■□□□ 1.92
CCDC28B-203ENST00000461819 FGRP09769 529 aa27.04■■□□□ 1.92
CCDC28B-203ENST00000461819 CYP2C8P10632 490 aa27.04■■□□□ 1.92
CCDC28B-203ENST00000461819 SMCR8Q8TEV9 937 aaPredicted RBP27.04■■□□□ 1.92
CCDC28B-203ENST00000461819 C12orf42Q96LP6 360 aa27.04■■□□□ 1.92
CCDC28B-203ENST00000461819 ANO2Q9NQ90 1003 aa27.04■■□□□ 1.92
CCDC28B-203ENST00000461819 IGKV6D-41A0A0C4DH26 115 aa27.03■■□□□ 1.92
CCDC28B-203ENST00000461819 TLR2O60603 784 aa27.03■■□□□ 1.92
CCDC28B-203ENST00000461819 OSBPP22059 807 aa27.03■■□□□ 1.92
CCDC28B-203ENST00000461819 IRX3P78415 501 aaPredicted RBP27.03■■□□□ 1.92
CCDC28B-203ENST00000461819 NOM1Q5C9Z4 860 aaKnown RBP27.03■■□□□ 1.92
CCDC28B-203ENST00000461819 SIAH1Q8IUQ4 282 aa27.03■■□□□ 1.92
CCDC28B-203ENST00000461819 CEP95Q96GE4 821 aa27.03■■□□□ 1.92
CCDC28B-203ENST00000461819 TMX2Q9Y320 296 aa27.03■■□□□ 1.92
CCDC28B-203ENST00000461819 NEDD4P46934 1319 aa27.02■■□□□ 1.92
CCDC28B-203ENST00000461819 FKTNO75072 461 aa27.02■■□□□ 1.92
CCDC28B-203ENST00000461819 VCAM1P19320 739 aa27.02■■□□□ 1.92
CCDC28B-203ENST00000461819 ZNF296Q8WUU4 475 aaPredicted RBP27.02■■□□□ 1.92
CCDC28B-203ENST00000461819 MAP4K1Q92918 833 aa27.02■■□□□ 1.92
CCDC28B-203ENST00000461819 GOPCQ9HD26 462 aa27.02■■□□□ 1.92
CCDC28B-203ENST00000461819 NYAP2Q9P242 653 aa27.02■■□□□ 1.92
CCDC28B-203ENST00000461819 RAD21O60216 631 aa27.01■■□□□ 1.91
CCDC28B-203ENST00000461819 TTLL1O95922 423 aa27.01■■□□□ 1.91
CCDC28B-203ENST00000461819 PPP4R3BQ5MIZ7 849 aa27.01■■□□□ 1.91
CCDC28B-203ENST00000461819 LSG1Q9H089 658 aaKnown RBP27.01■■□□□ 1.91
CCDC28B-203ENST00000461819 ASCC2Q9H1I8 757 aaPredicted RBP27.01■■□□□ 1.91
CCDC28B-203ENST00000461819 VCPKMTQ9H867 229 aa27.01■■□□□ 1.91
CCDC28B-203ENST00000461819 MTMR4Q9NYA4 1195 aa27.01■■□□□ 1.91
CCDC28B-203ENST00000461819 CLIP2Q9UDT6 1046 aa27.01■■□□□ 1.91
CCDC28B-203ENST00000461819 CPA4Q9UI42 421 aa27.01■■□□□ 1.91
CCDC28B-203ENST00000461819 RBM8AQ9Y5S9 174 aaKnown RBP27.01■■□□□ 1.91
CCDC28B-203ENST00000461819 HOXA7P31268 230 aaPredicted RBP27■■□□□ 1.91
CCDC28B-203ENST00000461819 LPAR1Q92633 364 aa27■■□□□ 1.91
CCDC28B-203ENST00000461819 ESR2Q92731 530 aa27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms