RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 AMOTL1Q8IY63 956 aa12.12□□□□□ -0.47
USP39-210ENST00000459775 MYL10Q9BUA6 226 aa12.12□□□□□ -0.47
USP39-210ENST00000459775 SERPINB13Q9UIV8 391 aa12.12□□□□□ -0.47
USP39-210ENST00000459775 ABT1Q9ULW3 272 aaKnown RBP12.12□□□□□ -0.47
USP39-210ENST00000459775 NAV1Q8NEY1 1877 aa12.12□□□□□ -0.47
USP39-210ENST00000459775 K7ELQ4 463 aaPredicted RBP12.11□□□□□ -0.47
USP39-210ENST00000459775 LMOD1P29536 600 aaPredicted RBP12.11□□□□□ -0.47
USP39-210ENST00000459775 ST3GAL1Q11201 340 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 C16orf86Q6ZW13 317 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 TTC6Q86TZ1 520 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 PIAS4Q8N2W9 510 aaPredicted RBP12.11□□□□□ -0.47
USP39-210ENST00000459775 CRACR2BQ8N4Y2 399 aaPredicted RBP12.11□□□□□ -0.47
USP39-210ENST00000459775 IGDCC4Q8TDY8 1250 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 KRT23Q9C075 422 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 DEFB129Q9H1M3 183 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 IL17RBQ9NRM6 502 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.11□□□□□ -0.47
USP39-210ENST00000459775 PGAP2Q9UHJ9 254 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 DDX60LQ5H9U9 1706 aaKnown RBP12.11□□□□□ -0.47
USP39-210ENST00000459775 IFIT3O14879 490 aaKnown RBP12.11□□□□□ -0.47
USP39-210ENST00000459775 ENTPD3O75355 529 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 AKR1B1P15121 316 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 PDE4BQ07343 736 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 FAM151AQ8WW52 585 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 TEPSINQ96N21 525 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 RNF41Q9H4P4 317 aaPredicted RBP12.11□□□□□ -0.47
USP39-210ENST00000459775 LAMA4Q16363 1823 aa12.11□□□□□ -0.47
USP39-210ENST00000459775 TSPY2A6NKD2 308 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 ORC4O43929 436 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 GDF11O95390 407 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 SLC3A2P08195 630 aaKnown RBP12.1□□□□□ -0.47
USP39-210ENST00000459775 TMEM67Q5HYA8 995 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 NBPF12Q5TAG4 269 aaPredicted RBP12.1□□□□□ -0.47
USP39-210ENST00000459775 CCDC144CPQ8IYA2 1237 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 ESR2Q92731 530 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP39-210ENST00000459775 CNNM2Q9H8M5 875 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 NCOA5Q9HCD5 579 aaKnown RBP12.1□□□□□ -0.47
USP39-210ENST00000459775 ADARB2Q9NS39 739 aaKnown RBP12.1□□□□□ -0.47
USP39-210ENST00000459775 PI4KBQ9UBF8 816 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 ECM29Q5VYK3 1845 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 ROBO3Q96MS0 1386 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 ADM5C9JUS6 153 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 SH2B2O14492 632 aaPredicted RBP12.1□□□□□ -0.47
USP39-210ENST00000459775 HLA-DOAP06340 250 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 MAP2K2P36507 400 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 CCT2P78371 535 aaKnown RBP12.1□□□□□ -0.47
USP39-210ENST00000459775 RASGRP2Q7LDG7 609 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 ZNF444Q8N0Y2 327 aaPredicted RBP12.1□□□□□ -0.47
USP39-210ENST00000459775 ENAHQ8N8S7 591 aaPredicted RBP12.1□□□□□ -0.47
USP39-210ENST00000459775 SLKQ9H2G2 1235 aaPredicted RBP12.1□□□□□ -0.47
USP39-210ENST00000459775 LY9Q9HBG7 655 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 LIMCH1Q9UPQ0 1083 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 TNKSO95271 1327 aa12.1□□□□□ -0.47
USP39-210ENST00000459775 MYH1P12882 1939 aa12.09□□□□□ -0.47
USP39-210ENST00000459775 CCDC85CA6NKD9 419 aa12.09□□□□□ -0.47
USP39-210ENST00000459775 TSPY3P0CV98 308 aa12.09□□□□□ -0.47
USP39-210ENST00000459775 TSPY8P0CW00 308 aa12.09□□□□□ -0.47
USP39-210ENST00000459775 FMR1Q06787 632 aaKnown RBP eCLIP12.09□□□□□ -0.473e-6■■■□□ 16.1
USP39-210ENST00000459775 PRKG1Q13976 671 aa12.09□□□□□ -0.47
USP39-210ENST00000459775 BECN1Q14457 450 aa12.09□□□□□ -0.47
USP39-210ENST00000459775 CCDC83Q8IWF9 413 aa12.09□□□□□ -0.47
USP39-210ENST00000459775 DHX36Q9H2U1 1008 aaKnown RBP12.09□□□□□ -0.47
USP39-210ENST00000459775 FOCADQ5VW36 1801 aa12.09□□□□□ -0.47
USP39-210ENST00000459775 ATRNL1Q5VV63 1379 aa12.08□□□□□ -0.47
USP39-210ENST00000459775 KLF18A0A0U1RQI7 1052 aa12.08□□□□□ -0.47
USP39-210ENST00000459775 TTC36A6NLP5 189 aa12.08□□□□□ -0.47
USP39-210ENST00000459775 MPHOSPH10O00566 681 aaKnown RBP12.08□□□□□ -0.47
USP39-210ENST00000459775 RCSD1Q6JBY9 416 aa12.08□□□□□ -0.47
USP39-210ENST00000459775 NBPF11Q86T75 865 aa12.08□□□□□ -0.47
USP39-210ENST00000459775 CCDC84Q86UT8 332 aaPredicted RBP12.08□□□□□ -0.47
USP39-210ENST00000459775 CEP120Q8N960 986 aa12.08□□□□□ -0.47
USP39-210ENST00000459775 HHIPL1Q96JK4 782 aa12.08□□□□□ -0.47
USP39-210ENST00000459775 CAPNS2Q96L46 248 aa12.08□□□□□ -0.47
USP39-210ENST00000459775 ZSCAN10Q96SZ4 725 aaPredicted RBP12.08□□□□□ -0.47
USP39-210ENST00000459775 UBAC1Q9BSL1 405 aa12.08□□□□□ -0.47
USP39-210ENST00000459775 SIPA1L1O43166 1804 aa12.08□□□□□ -0.48
USP39-210ENST00000459775 SEC23AQ15436 765 aa12.08□□□□□ -0.48
USP39-210ENST00000459775 FKBP1CQ5VVH2 108 aa12.08□□□□□ -0.48
USP39-210ENST00000459775 USP50Q70EL3 339 aaPredicted RBP12.08□□□□□ -0.48
USP39-210ENST00000459775 FAM83AQ86UY5 434 aa12.08□□□□□ -0.48
USP39-210ENST00000459775 AGXT2Q9BYV1 514 aa12.08□□□□□ -0.48
USP39-210ENST00000459775 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.08□□□□□ -0.48
USP39-210ENST00000459775 ANGEL1Q9UNK9 670 aaKnown RBP12.08□□□□□ -0.48
USP39-210ENST00000459775 HPS5Q9UPZ3 1129 aa12.08□□□□□ -0.48
USP39-210ENST00000459775 LAMB1P07942 1786 aa12.08□□□□□ -0.48
USP39-210ENST00000459775 PDIA3P30101 505 aaKnown RBP12.07□□□□□ -0.48
USP39-210ENST00000459775 NBPF20Q3BBV1 942 aa12.07□□□□□ -0.48
USP39-210ENST00000459775 MAP1SQ66K74 1059 aaPredicted RBP12.07□□□□□ -0.48
USP39-210ENST00000459775 NFXL1Q6ZNB6 911 aa12.07□□□□□ -0.48
USP39-210ENST00000459775 CMTR1Q8N1G2 835 aaKnown RBP12.07□□□□□ -0.48
USP39-210ENST00000459775 CEP95Q96GE4 821 aa12.07□□□□□ -0.48
USP39-210ENST00000459775 WTAPQ15007 396 aa12.07□□□□□ -0.48
USP39-210ENST00000459775 CERKLQ49MI3 558 aaPredicted RBP12.07□□□□□ -0.48
USP39-210ENST00000459775 USP48Q86UV5 1035 aa12.07□□□□□ -0.48
USP39-210ENST00000459775 MICU3Q86XE3 530 aa12.07□□□□□ -0.48
USP39-210ENST00000459775 FOXP4Q8IVH2 680 aaPredicted RBP12.07□□□□□ -0.48
USP39-210ENST00000459775 TRIM34Q9BYJ4 488 aa12.07□□□□□ -0.48
USP39-210ENST00000459775 EHD4Q9H223 541 aa12.07□□□□□ -0.48
USP39-210ENST00000459775 ALDH8A1Q9H2A2 487 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms