RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 HIRAP54198 1017 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 WNT7BP56706 349 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 MECOMQ03112 1051 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 LHX8Q68G74 356 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 TRIM74Q86UV6 250 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 TRIM73Q86UV7 250 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 CCDC116Q8IYX3 515 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 CLASRPQ8N2M8 674 aaKnown RBP5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 SVIPQ8NHG7 77 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 SEC16BQ96JE7 1060 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 HS3ST6Q96QI5 342 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 DNAJC7Q99615 494 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 ST7Q9NRC1 585 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 UBP1Q9NZI7 540 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 RABL2AQ9UBK7 228 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 USP25Q9UHP3 1055 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 TLR6Q9Y2C9 796 aa5.63□□□□□ -1.51
CCDC88A-209ENST00000456975 COL22A1Q8NFW1 1626 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 SHTN1A0MZ66 631 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 DYTNA2CJ06 578 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 CDC45O75419 566 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 TNNT1P13805 278 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 GBP2P32456 591 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 CENPCQ03188 943 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 KANK3Q6NY19 840 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 FBXL19Q6PCT2 694 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 ZNF438Q7Z4V0 828 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 KIAA1958Q8N8K9 716 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 HSH2DQ96JZ2 352 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 KIF2CQ99661 725 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 IRAK4Q9NWZ3 460 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 TMCC3Q9ULS5 477 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 EP400Q96L91 3159 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 ZFYVE9O95405 1425 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 DCCP43146 1447 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 RIMS2Q9UQ26 1411 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 GOLGA6L6A8MZA4 724 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 MAN1A1P33908 653 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 EIF4A3P38919 411 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 DHX9Q08211 1270 aaKnown RBP5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 GRM2Q14416 872 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 CCDC85BQ15834 202 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 FXNQ16595 210 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 THSD4Q6ZMP0 1018 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 KIAA1211Q6ZU35 1233 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 FMNL3Q8IVF7 1028 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 ZNF296Q8WUU4 475 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 C17orf50Q8WW18 174 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 TEKT1Q969V4 418 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 FHDC1Q9C0D6 1143 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 ZFYVE28Q9HCC9 887 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 MKS1Q9NXB0 559 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 SIRPGQ9P1W8 387 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 IP6K2Q9UHH9 426 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 USP21Q9UK80 565 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 TRPC5Q9UL62 973 aaPredicted RBP5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 CLTCL1P53675 1640 aa5.62□□□□□ -1.51
CCDC88A-209ENST00000456975 ATRNO75882 1429 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 BLMP54132 1417 aaPredicted RBP5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 MST1RQ04912 1400 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 LAMC1P11047 1609 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 ANKRD30BQ9BXX2 1392 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 MEN1O00255 615 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 EREGO14944 169 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 ALDH1B1P30837 517 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 MAP3K10Q02779 954 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 PLEKHG4Q58EX7 1191 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 TAX1BP1Q86VP1 789 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 LCA5Q86VQ0 697 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 CPLX3Q8WVH0 158 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 EMID1Q96A84 441 aaPredicted RBP5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 LRRC59Q96AG4 307 aaKnown RBP5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 CCDC34Q96HJ3 373 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 CDK15Q96Q40 435 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 NAP1L4Q99733 375 aaKnown RBP5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 ZHX3Q9H4I2 956 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 C19orf44Q9H6X5 657 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 CD248Q9HCU0 757 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 TMOD4Q9NZQ9 345 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 ITM2BQ9Y287 266 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 RAD50Q92878 1312 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 RGPD1P0DJD0 1748 aa5.61□□□□□ -1.51
CCDC88A-209ENST00000456975 PHACTR2O75167 634 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 SLC7A5Q01650 507 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 MAP9Q49MG5 647 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 JAKMIP3Q5VZ66 844 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 NLRP13Q86W25 1043 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 NDUFAF2Q8N183 169 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 CMTR1Q8N1G2 835 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 FAM169BQ8N8A8 192 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 TBC1D22AQ8WUA7 517 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 KCTD12Q96CX2 325 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 BRINP2Q9C0B6 783 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 IQCGQ9H095 443 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 LATS2Q9NRM7 1088 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 PPT2Q9UMR5 302 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 PTCH1Q13635 1447 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 SPATA31E1Q6ZUB1 1445 aa5.6□□□□□ -1.51
CCDC88A-209ENST00000456975 PABPN1LA6NDY0 278 aaKnown RBP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms