RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 GSTO1P78417 241 aa17.27■□□□□ 0.35
LDLR-202ENST00000455727 CCZ1BP86790 482 aa17.27■□□□□ 0.35
LDLR-202ENST00000455727 CCZ1P86791 482 aaPredicted RBP17.27■□□□□ 0.35
LDLR-202ENST00000455727 GRIN1Q05586 938 aa17.27■□□□□ 0.35
LDLR-202ENST00000455727 CNBD1Q8NA66 436 aa17.27■□□□□ 0.35
LDLR-202ENST00000455727 GJD4Q96KN9 370 aaPredicted RBP17.27■□□□□ 0.35
LDLR-202ENST00000455727 POLR2DO15514 142 aaKnown RBP17.26■□□□□ 0.35
LDLR-202ENST00000455727 SARSP49591 514 aaKnown RBP17.26■□□□□ 0.35
LDLR-202ENST00000455727 PPP4CP60510 307 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 ARID5BQ14865 1188 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 POSTNQ15063 836 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 FAM182BQ5T319 152 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 FAM196AQ6ZSG2 479 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 ANKS1AQ92625 1134 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 TNFRSF25Q93038 417 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 PDCL3Q9H2J4 239 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 SMC2O95347 1197 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 FANCCQ00597 558 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 SPECC1Q5M775 1068 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 C12orf60Q5U649 245 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 ISM2Q6H9L7 571 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 MTERF4Q7Z6M4 381 aaKnown RBP17.26■□□□□ 0.35
LDLR-202ENST00000455727 SRBD1Q8N5C6 995 aaKnown RBP17.26■□□□□ 0.35
LDLR-202ENST00000455727 TRIML1Q8N9V2 468 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 CCDC150Q8NCX0 1101 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 FERMT2Q96AC1 680 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 MCM9Q9NXL9 1143 aa17.26■□□□□ 0.35
LDLR-202ENST00000455727 ROBO3Q96MS0 1386 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 TSPY2A6NKD2 308 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 CYP2D6P10635 497 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 EVX2Q03828 476 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 NPY5RQ15761 445 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 FAM47AQ5JRC9 791 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 RCSD1Q6JBY9 416 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 ZNF804AQ7Z570 1209 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 DGKHQ86XP1 1220 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 CERKQ8TCT0 537 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 NMT2O60551 498 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 BAG3O95817 575 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 LMOD1P29536 600 aaPredicted RBP17.25■□□□□ 0.35
LDLR-202ENST00000455727 KIF5BP33176 963 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 CCDC178Q5BJE1 867 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 CERS3Q8IU89 383 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 CSRNP2Q9H175 543 aa17.25■□□□□ 0.35
LDLR-202ENST00000455727 UBR3Q6ZT12 1888 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 CBFA2T2O43439 604 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 LDHCP07864 332 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 MLKLQ8NB16 471 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 SPATA20Q8TB22 786 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 CCDC34Q96HJ3 373 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 SERTAD1Q9UHV2 236 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 ACTN4O43707 911 aaKnown RBP17.24■□□□□ 0.35
LDLR-202ENST00000455727 SCG2P13521 617 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 BMP6P22004 513 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 PFKFB3Q16875 520 aaPredicted RBP17.24■□□□□ 0.35
LDLR-202ENST00000455727 TPD52L1Q16890 204 aaPredicted RBP17.24■□□□□ 0.35
LDLR-202ENST00000455727 EARS2Q5JPH6 523 aaKnown RBP17.24■□□□□ 0.35
LDLR-202ENST00000455727 BCL11BQ9C0K0 894 aaPredicted RBP17.24■□□□□ 0.35
LDLR-202ENST00000455727 DACH1Q9UI36 760 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 MAN1B1Q9UKM7 699 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 PAXBP1Q9Y5B6 917 aa17.24■□□□□ 0.35
LDLR-202ENST00000455727 hCG_1642624A0A1W2PR95 340 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 FOXN1O15353 648 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 USP17L8P0C7I0 530 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 TNNT1P13805 278 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 ATP2B1P20020 1258 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 USP5P45974 858 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 KCNJ6P48051 423 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 TRAPPC10P48553 1259 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 CRY2Q49AN0 593 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 PRR5LQ6MZQ0 368 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 SMARCE1Q969G3 411 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 TCP11L1Q9NUJ3 509 aa17.23■□□□□ 0.35
LDLR-202ENST00000455727 FAM205CA6NFA0 338 aa17.22■□□□□ 0.35
LDLR-202ENST00000455727 MORC3Q14149 939 aa17.22■□□□□ 0.35
LDLR-202ENST00000455727 GLIPR1L2Q4G1C9 344 aa17.22■□□□□ 0.35
LDLR-202ENST00000455727 CT47A1Q5JQC4 288 aaPredicted RBP17.22■□□□□ 0.35
LDLR-202ENST00000455727 TMC6Q7Z403 805 aa17.22■□□□□ 0.35
LDLR-202ENST00000455727 C16orf45Q96MC5 204 aaPredicted RBP17.22■□□□□ 0.35
LDLR-202ENST00000455727 JAG2Q9Y219 1238 aa17.22■□□□□ 0.35
LDLR-202ENST00000455727 NAV1Q8NEY1 1877 aa17.22■□□□□ 0.35
LDLR-202ENST00000455727 RIOK3O14730 519 aaKnown RBP17.22■□□□□ 0.35
LDLR-202ENST00000455727 ATP1A3P13637 1013 aa17.22■□□□□ 0.35
LDLR-202ENST00000455727 RBM10P98175 930 aaKnown RBP17.22■□□□□ 0.35
LDLR-202ENST00000455727 TFAP4Q01664 338 aa17.22■□□□□ 0.35
LDLR-202ENST00000455727 AMOTL1Q8IY63 956 aa17.22■□□□□ 0.35
LDLR-202ENST00000455727 SH3RF3Q8TEJ3 882 aaPredicted RBP17.22■□□□□ 0.35
LDLR-202ENST00000455727 KAT14Q9H8E8 782 aa17.22■□□□□ 0.35
LDLR-202ENST00000455727 UBASH3AP57075 661 aa17.21■□□□□ 0.35
LDLR-202ENST00000455727 RPGRQ92834 1020 aaKnown RBP17.21■□□□□ 0.35
LDLR-202ENST00000455727 SH3GLB2Q9NR46 395 aa17.21■□□□□ 0.35
LDLR-202ENST00000455727 LRRC4BQ9NT99 713 aa17.21■□□□□ 0.35
LDLR-202ENST00000455727 CDK5RAP2Q96SN8 1893 aa17.21■□□□□ 0.35
LDLR-202ENST00000455727 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.21■□□□□ 0.35
LDLR-202ENST00000455727 ATP2B4P23634 1241 aa17.21■□□□□ 0.35
LDLR-202ENST00000455727 ATP2C1P98194 919 aaPredicted RBP17.21■□□□□ 0.35
LDLR-202ENST00000455727 TTC38Q5R3I4 469 aa17.21■□□□□ 0.35
LDLR-202ENST00000455727 ARMCX5Q6P1M9 558 aa17.21■□□□□ 0.35
LDLR-202ENST00000455727 NYAP1Q6ZVC0 841 aa17.21■□□□□ 0.35
LDLR-202ENST00000455727 USP49Q70CQ1 688 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 413.4 ms