RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 SLC44A5Q8NCS7 719 aa18.44■□□□□ 0.54
SNX17-204ENST00000453453 CSRNP1Q96S65 589 aa18.44■□□□□ 0.54
SNX17-204ENST00000453453 ADARB2Q9NS39 739 aaKnown RBP18.44■□□□□ 0.54
SNX17-204ENST00000453453 CNTNAP1P78357 1384 aa18.44■□□□□ 0.54
SNX17-204ENST00000453453 EGFRP00533 1210 aa18.43■□□□□ 0.54
SNX17-204ENST00000453453 RASA1P20936 1047 aa18.43■□□□□ 0.54
SNX17-204ENST00000453453 EPS15P42566 896 aa18.43■□□□□ 0.54
SNX17-204ENST00000453453 SYNE3Q6ZMZ3 975 aa18.43■□□□□ 0.54
SNX17-204ENST00000453453 IGDCC4Q8TDY8 1250 aa18.43■□□□□ 0.54
SNX17-204ENST00000453453 ZNF274Q96GC6 653 aaPredicted RBP18.43■□□□□ 0.54
SNX17-204ENST00000453453 ZKSCAN3Q9BRR0 538 aa18.43■□□□□ 0.54
SNX17-204ENST00000453453 FAM13BQ9NYF5 915 aa18.43■□□□□ 0.54
SNX17-204ENST00000453453 TNKSO95271 1327 aa18.43■□□□□ 0.54
SNX17-204ENST00000453453 KLF18A0A0U1RQI7 1052 aa18.42■□□□□ 0.54
SNX17-204ENST00000453453 PTMAP06454 111 aaKnown RBP18.42■□□□□ 0.54
SNX17-204ENST00000453453 TPM3P06753 285 aa18.42■□□□□ 0.54
SNX17-204ENST00000453453 ME3Q16798 604 aa18.42■□□□□ 0.54
SNX17-204ENST00000453453 SH3BP5LQ7L8J4 393 aa18.42■□□□□ 0.54
SNX17-204ENST00000453453 PIBF1Q8WXW3 757 aa18.42■□□□□ 0.54
SNX17-204ENST00000453453 L3MBTL3Q96JM7 780 aaPredicted RBP18.42■□□□□ 0.54
SNX17-204ENST00000453453 LY9Q9HBG7 655 aa18.42■□□□□ 0.54
SNX17-204ENST00000453453 HACL1Q9UJ83 578 aa18.42■□□□□ 0.54
SNX17-204ENST00000453453 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.42■□□□□ 0.54
SNX17-204ENST00000453453 GLTPD2A6NH11 291 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 EVCP57679 992 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 SGMS1Q86VZ5 419 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 NKX2-3Q8TAU0 364 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 TRPM4Q8TD43 1214 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 GPHNQ9NQX3 736 aaPredicted RBP18.41■□□□□ 0.54
SNX17-204ENST00000453453 HERC5Q9UII4 1024 aaKnown RBP18.41■□□□□ 0.54
SNX17-204ENST00000453453 SCN4AP35499 1836 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 GOLGA8BA8MQT2 603 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 PFKFB2O60825 505 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 LARGE1O95461 756 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 STK3Q13188 491 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 CCDC183Q5T5S1 534 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 IFIT1BQ5T764 474 aaKnown RBP18.41■□□□□ 0.54
SNX17-204ENST00000453453 CCDC83Q8IWF9 413 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 CCDC17Q96LX7 622 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 TCP11L1Q9NUJ3 509 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 SLC12A7Q9Y666 1083 aa18.41■□□□□ 0.54
SNX17-204ENST00000453453 SHMT1P34896 483 aa18.4■□□□□ 0.54
SNX17-204ENST00000453453 RBM10P98175 930 aaKnown RBP18.4■□□□□ 0.54
SNX17-204ENST00000453453 RASA3Q14644 834 aa18.4■□□□□ 0.54
SNX17-204ENST00000453453 ENAHQ8N8S7 591 aaPredicted RBP18.4■□□□□ 0.54
SNX17-204ENST00000453453 NEDD1Q8NHV4 660 aa18.4■□□□□ 0.54
SNX17-204ENST00000453453 CCDC94Q9BW85 323 aaPredicted RBP18.4■□□□□ 0.54
SNX17-204ENST00000453453 TMEM39BQ9GZU3 492 aa18.4■□□□□ 0.54
SNX17-204ENST00000453453 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.4■□□□□ 0.54
SNX17-204ENST00000453453 PLIN4Q96Q06 1357 aa18.39■□□□□ 0.53
SNX17-204ENST00000453453 IQCA1LA6NCM1 817 aa18.39■□□□□ 0.53
SNX17-204ENST00000453453 DHX16O60231 1041 aaKnown RBP18.39■□□□□ 0.53
SNX17-204ENST00000453453 PDIA3P30101 505 aaKnown RBP18.39■□□□□ 0.53
SNX17-204ENST00000453453 SEC23AQ15436 765 aa18.39■□□□□ 0.53
SNX17-204ENST00000453453 PPP4R3BQ5MIZ7 849 aa18.39■□□□□ 0.53
SNX17-204ENST00000453453 UTP14CQ5TAP6 766 aaKnown RBP18.39■□□□□ 0.53
SNX17-204ENST00000453453 ANGEL2Q5VTE6 544 aaKnown RBP18.39■□□□□ 0.53
SNX17-204ENST00000453453 METTL16Q86W50 562 aaKnown RBP18.39■□□□□ 0.53
SNX17-204ENST00000453453 GTF3C6Q969F1 213 aa18.39■□□□□ 0.53
SNX17-204ENST00000453453 HOOK2Q96ED9 719 aa18.39■□□□□ 0.53
SNX17-204ENST00000453453 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.39■□□□□ 0.53
SNX17-204ENST00000453453 SPTLC3Q9NUV7 552 aa18.39■□□□□ 0.53
SNX17-204ENST00000453453 PITPNM2Q9BZ72 1349 aa18.38■□□□□ 0.53
SNX17-204ENST00000453453 ZBTB43O43298 467 aa18.38■□□□□ 0.53
SNX17-204ENST00000453453 CERKLQ49MI3 558 aaPredicted RBP18.38■□□□□ 0.53
SNX17-204ENST00000453453 APOA5Q6Q788 366 aa18.38■□□□□ 0.53
SNX17-204ENST00000453453 CATIPQ7Z7H3 387 aa18.38■□□□□ 0.53
SNX17-204ENST00000453453 DGKHQ86XP1 1220 aa18.38■□□□□ 0.53
SNX17-204ENST00000453453 NECAB1Q8N987 351 aa18.38■□□□□ 0.53
SNX17-204ENST00000453453 GGA3Q9NZ52 723 aa18.38■□□□□ 0.53
SNX17-204ENST00000453453 PRDM4Q9UKN5 801 aa18.38■□□□□ 0.53
SNX17-204ENST00000453453 MPHOSPH10O00566 681 aaKnown RBP18.38■□□□□ 0.53
SNX17-204ENST00000453453 METAP2P50579 478 aaKnown RBP eCLIP18.38■□□□□ 0.53
SNX17-204ENST00000453453 RCAN1P53805 252 aa18.38■□□□□ 0.53
SNX17-204ENST00000453453 USP50Q70EL3 339 aaPredicted RBP18.38■□□□□ 0.53
SNX17-204ENST00000453453 SMC3Q9UQE7 1217 aa18.38■□□□□ 0.53
SNX17-204ENST00000453453 PPP2R3BQ9Y5P8 575 aa18.38■□□□□ 0.53
SNX17-204ENST00000453453 WDR90Q96KV7 1748 aa18.37■□□□□ 0.53
SNX17-204ENST00000453453 ASTN2O75129 1339 aaPredicted RBP18.37■□□□□ 0.53
SNX17-204ENST00000453453 TBC1D12O60347 775 aa18.37■□□□□ 0.53
SNX17-204ENST00000453453 CALM1P0DP23 149 aa18.37■□□□□ 0.53
SNX17-204ENST00000453453 CALM2P0DP24 149 aa18.37■□□□□ 0.53
SNX17-204ENST00000453453 CALM3P0DP25 149 aa18.37■□□□□ 0.53
SNX17-204ENST00000453453 AKR1B1P15121 316 aa18.37■□□□□ 0.53
SNX17-204ENST00000453453 TATDN1Q6P1N9 297 aa18.37■□□□□ 0.53
SNX17-204ENST00000453453 ZNF654Q8IZM8 581 aa18.37■□□□□ 0.53
SNX17-204ENST00000453453 DEFB129Q9H1M3 183 aa18.37■□□□□ 0.53
SNX17-204ENST00000453453 DNAJC18Q9H819 358 aa18.37■□□□□ 0.53
SNX17-204ENST00000453453 KAT14Q9H8E8 782 aa18.37■□□□□ 0.53
SNX17-204ENST00000453453 GREB1LQ9C091 1923 aaPredicted RBP18.36■□□□□ 0.53
SNX17-204ENST00000453453 GOLGA8AA7E2F4 631 aa18.36■□□□□ 0.53
SNX17-204ENST00000453453 NMT2O60551 498 aa18.36■□□□□ 0.53
SNX17-204ENST00000453453 EPHX2P34913 555 aa18.36■□□□□ 0.53
SNX17-204ENST00000453453 HIRAP54198 1017 aaPredicted RBP18.36■□□□□ 0.53
SNX17-204ENST00000453453 CCT2P78371 535 aaKnown RBP18.36■□□□□ 0.53
SNX17-204ENST00000453453 CPLX2Q6PUV4 134 aaKnown RBP18.36■□□□□ 0.53
SNX17-204ENST00000453453 MICU3Q86XE3 530 aa18.36■□□□□ 0.53
SNX17-204ENST00000453453 ANKS1AQ92625 1134 aa18.36■□□□□ 0.53
SNX17-204ENST00000453453 DCPSQ96C86 337 aaKnown RBP18.36■□□□□ 0.53
SNX17-204ENST00000453453 LLPHQ9BRT6 129 aaKnown RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms