RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 A0A0D9SFI3 127 aa10.4□□□□□ -0.74
COL28A1-205ENST00000453441 M0R2C6 588 aa10.4□□□□□ -0.74
COL28A1-205ENST00000453441 GPR37O15354 613 aa10.4□□□□□ -0.74
COL28A1-205ENST00000453441 CDC45O75419 566 aa10.4□□□□□ -0.74
COL28A1-205ENST00000453441 CHMLP26374 656 aa10.4□□□□□ -0.74
COL28A1-205ENST00000453441 NT5C2P49902 561 aa10.4□□□□□ -0.74
COL28A1-205ENST00000453441 TTLL12Q14166 644 aaPredicted RBP10.4□□□□□ -0.74
COL28A1-205ENST00000453441 ALX1Q15699 326 aa10.4□□□□□ -0.74
COL28A1-205ENST00000453441 SBK1Q52WX2 424 aa10.4□□□□□ -0.74
COL28A1-205ENST00000453441 CST9Q5W186 159 aa10.4□□□□□ -0.74
COL28A1-205ENST00000453441 CWC27Q6UX04 472 aaKnown RBP10.4□□□□□ -0.74
COL28A1-205ENST00000453441 ZNF287Q9HBT7 754 aa10.4□□□□□ -0.74
COL28A1-205ENST00000453441 MCM9Q9NXL9 1143 aa10.4□□□□□ -0.74
COL28A1-205ENST00000453441 DDTLA6NHG4 134 aaPredicted RBP10.39□□□□□ -0.75
COL28A1-205ENST00000453441 GSG1L2A8MUP6 293 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 APPP05067 770 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 POLR3DP05423 398 aaPredicted RBP10.39□□□□□ -0.75
COL28A1-205ENST00000453441 SLC3A2P08195 630 aaKnown RBP10.39□□□□□ -0.75
COL28A1-205ENST00000453441 TDO2P48775 406 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 SLFNL1Q499Z3 407 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 NYAP1Q6ZVC0 841 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.39□□□□□ -0.75
COL28A1-205ENST00000453441 SH3BP5LQ7L8J4 393 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 SAPCD2Q86UD0 394 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 ANKRD13AQ8IZ07 590 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 CRACR2BQ8N4Y2 399 aaPredicted RBP10.39□□□□□ -0.75
COL28A1-205ENST00000453441 SDR42E1Q8WUS8 393 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 KLRG1Q96E93 195 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 FAM227BQ96M60 508 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 NAPBQ9H115 298 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 SWAP70Q9UH65 585 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 SERPINB13Q9UIV8 391 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 ZNF112Q9UJU3 913 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 ABT1Q9ULW3 272 aaKnown RBP10.39□□□□□ -0.75
COL28A1-205ENST00000453441 ANGEL1Q9UNK9 670 aaKnown RBP10.39□□□□□ -0.75
COL28A1-205ENST00000453441 ADGRG1Q9Y653 693 aa10.39□□□□□ -0.75
COL28A1-205ENST00000453441 RASSF10A6NK89 507 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 PRKAB2O43741 272 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 USP2O75604 605 aaPredicted RBP10.38□□□□□ -0.75
COL28A1-205ENST00000453441 OATP04181 439 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 CHGBP05060 677 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 PCP11498 1178 aaKnown RBP10.38□□□□□ -0.75
COL28A1-205ENST00000453441 ECE1P42892 770 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 HUNKP57058 714 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 NOL9Q5SY16 702 aaKnown RBP10.38□□□□□ -0.75
COL28A1-205ENST00000453441 LDLRAD1Q5T700 205 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 C12orf60Q5U649 245 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 PRAMEF18Q5VWM3 479 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 ZFPM1Q8IX07 1006 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 IFNL3Q8IZI9 196 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.38□□□□□ -0.75
COL28A1-205ENST00000453441 CCDC102AQ96A19 550 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 SEC62Q99442 399 aaKnown RBP10.38□□□□□ -0.75
COL28A1-205ENST00000453441 DSCC1Q9BVC3 393 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 TBC1D2Q9BYX2 928 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 CTNNA3Q9UI47 895 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 TSR3Q9UJK0 312 aaKnown RBP10.38□□□□□ -0.75
COL28A1-205ENST00000453441 PALD1Q9ULE6 856 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 SCAF8Q9UPN6 1271 aaKnown RBP10.38□□□□□ -0.75
COL28A1-205ENST00000453441 CSADQ9Y600 493 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 LAMB1P07942 1786 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 BAZ2AQ9UIF9 1905 aaKnown RBP10.38□□□□□ -0.75
COL28A1-205ENST00000453441 ROBO3Q96MS0 1386 aa10.38□□□□□ -0.75
COL28A1-205ENST00000453441 USP17L12C9JPN9 530 aa10.37□□□□□ -0.75
COL28A1-205ENST00000453441 USP17L21D6R901 530 aa10.37□□□□□ -0.75
COL28A1-205ENST00000453441 SGSM2O43147 1006 aa10.37□□□□□ -0.75
COL28A1-205ENST00000453441 CTNND1O60716 968 aaKnown RBP10.37□□□□□ -0.75
COL28A1-205ENST00000453441 RGMBQ6NW40 437 aa10.37□□□□□ -0.75
COL28A1-205ENST00000453441 KIAA1211Q6ZU35 1233 aa10.37□□□□□ -0.75
COL28A1-205ENST00000453441 WRNIP1Q96S55 665 aa10.37□□□□□ -0.75
COL28A1-205ENST00000453441 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.37□□□□□ -0.75
COL28A1-205ENST00000453441 SAP30BPQ9UHR5 308 aaKnown RBP10.37□□□□□ -0.75
COL28A1-205ENST00000453441 GTF3C3Q9Y5Q9 886 aa10.37□□□□□ -0.75
COL28A1-205ENST00000453441 OTOFQ9HC10 1997 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 SIPA1L1O43166 1804 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 EPB41L2O43491 1005 aaKnown RBP10.36□□□□□ -0.75
COL28A1-205ENST00000453441 ZBTB48P10074 688 aaPredicted RBP10.36□□□□□ -0.75
COL28A1-205ENST00000453441 HSPD1P10809 573 aaKnown RBP10.36□□□□□ -0.75
COL28A1-205ENST00000453441 GABPAQ06546 454 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 FMR1Q06787 632 aaKnown RBP eCLIP10.36□□□□□ -0.75
COL28A1-205ENST00000453441 DEFB115Q30KQ5 88 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 CTR9Q6PD62 1173 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 DLK2Q6UY11 383 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 CCDC129Q6ZRS4 1044 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 MIGA2Q7L4E1 593 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 ZNF589Q86UQ0 364 aaPredicted RBP10.36□□□□□ -0.75
COL28A1-205ENST00000453441 SCYL3Q8IZE3 742 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 CCDC17Q96LX7 622 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 ESYT1Q9BSJ8 1104 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 EPB41L4AQ9HCS5 686 aaPredicted RBP10.36□□□□□ -0.75
COL28A1-205ENST00000453441 ANAPC4Q9UJX5 808 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 MYH8P13535 1937 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 DOCK1Q14185 1865 aa10.36□□□□□ -0.75
COL28A1-205ENST00000453441 PHF20L1A8MW92 1017 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 UBE2Q2LH0YL09 131 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 ASNSP08243 561 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 DNAJB2P25686 324 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 PLCD1P51178 756 aa10.35□□□□□ -0.75
COL28A1-205ENST00000453441 ZNF157P51786 506 aaPredicted RBP10.35□□□□□ -0.75
COL28A1-205ENST00000453441 PDE4BQ07343 736 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms