RNA–Protein interactions for RNA: ENST00000448520.5

PDLIM2-213, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-213ENST00000448520 LNPKQ9C0E8 428 aa16.62■□□□□ 0.25
PDLIM2-213ENST00000448520 PRO3102Q9H379 93 aa16.62■□□□□ 0.25
PDLIM2-213ENST00000448520 EMILIN3Q9NT22 766 aa16.62■□□□□ 0.25
PDLIM2-213ENST00000448520 TLR7Q9NYK1 1049 aaKnown RBP16.62■□□□□ 0.25
PDLIM2-213ENST00000448520 A0A1W2PPC1 479 aa16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 GH2P01242 217 aa16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 CYP2B6P20813 491 aa16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 ERVK-9P63128 1117 aa16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 ERVK-24P63145 666 aa16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 CERKLQ49MI3 558 aaPredicted RBP16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 AACSQ86V21 672 aa16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 MIGA1Q8NAN2 632 aa16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 OTUD7AQ8TE49 926 aaPredicted RBP16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 C12orf42Q96LP6 360 aa16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 TXNRD2Q9NNW7 524 aa16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 CABP5Q9NP86 173 aa16.61■□□□□ 0.25
PDLIM2-213ENST00000448520 USP17L15C9J2P7 530 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 USP17L13C9JLJ4 530 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 USP17L11C9JVI0 530 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 USP17L18D6R9N7 530 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 USP17L22D6RA61 530 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 USP17L17D6RBQ6 530 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 USP17L19D6RCP7 530 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 USP17L20D6RJB6 530 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 NUCB1Q02818 461 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 USP17L24Q0WX57 530 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 Q3C1V9 767 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 NBPF3Q9H094 633 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 ANTXR1Q9H6X2 564 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 RABGAP1Q9Y3P9 1069 aa16.6■□□□□ 0.25
PDLIM2-213ENST00000448520 GLRX3O76003 335 aaKnown RBP16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 PDE4AP27815 886 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 RGS2P41220 211 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 CCNA1P78396 465 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 ABCB5Q2M3G0 1257 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 SHROOM1Q2M3G4 852 aaPredicted RBP16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 MAP3K21Q5TCX8 1036 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 PLEKHH3Q7Z736 793 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 CHD1LQ86WJ1 897 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 CLASRPQ8N2M8 674 aaKnown RBP16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 TRIB2Q92519 343 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 USP6NLQ92738 828 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 FEZ1Q99689 392 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 KIAA1683Q9H0B3 1180 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 OGDHLQ9ULD0 1010 aa16.59■□□□□ 0.25
PDLIM2-213ENST00000448520 POLR3DP05423 398 aaPredicted RBP16.58■□□□□ 0.24
PDLIM2-213ENST00000448520 TRIM32Q13049 653 aa16.58■□□□□ 0.24
PDLIM2-213ENST00000448520 RAB3GAP1Q15042 981 aa16.58■□□□□ 0.24
PDLIM2-213ENST00000448520 CATSPERGQ6ZRH7 1159 aa16.58■□□□□ 0.24
PDLIM2-213ENST00000448520 GPR142Q7Z601 462 aa16.58■□□□□ 0.24
PDLIM2-213ENST00000448520 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.58■□□□□ 0.24
PDLIM2-213ENST00000448520 PAGR1Q9BTK6 254 aa16.58■□□□□ 0.24
PDLIM2-213ENST00000448520 PLXNB2O15031 1838 aa16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 MAGEB6P1A0A0J9YX57 407 aa16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 PRKAR2AP13861 404 aaKnown RBP16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 ZKSCAN1P17029 563 aaPredicted RBP16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 MORN1Q5T089 497 aa16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 DIS3LQ8TF46 1054 aaKnown RBP16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 RIOK1Q9BRS2 568 aaKnown RBP16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 CRNKL1Q9BZJ0 848 aaKnown RBP16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 PORCNQ9H237 461 aa16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 CWC22Q9HCG8 908 aaKnown RBP16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 NDUFB9Q9Y6M9 179 aa16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 RANBP2P49792 3224 aaKnown RBP16.57■□□□□ 0.24
PDLIM2-213ENST00000448520 PEX10O60683 326 aa16.56■□□□□ 0.24
PDLIM2-213ENST00000448520 BMP8BP34820 402 aa16.56■□□□□ 0.24
PDLIM2-213ENST00000448520 PLCD1P51178 756 aa16.56■□□□□ 0.24
PDLIM2-213ENST00000448520 SLC9C2Q5TAH2 1124 aa16.56■□□□□ 0.24
PDLIM2-213ENST00000448520 TSHZ3Q63HK5 1081 aa16.56■□□□□ 0.24
PDLIM2-213ENST00000448520 LBX2Q6XYB7 198 aa16.56■□□□□ 0.24
PDLIM2-213ENST00000448520 EDC3Q96F86 508 aaKnown RBP16.56■□□□□ 0.24
PDLIM2-213ENST00000448520 C11orf49Q9H6J7 331 aa16.56■□□□□ 0.24
PDLIM2-213ENST00000448520 STAP2Q9UGK3 403 aa16.56■□□□□ 0.24
PDLIM2-213ENST00000448520 IFIT2P09913 472 aaKnown RBP16.55■□□□□ 0.24
PDLIM2-213ENST00000448520 MNX1P50219 401 aaPredicted RBP16.55■□□□□ 0.24
PDLIM2-213ENST00000448520 GABPAQ06546 454 aa16.55■□□□□ 0.24
PDLIM2-213ENST00000448520 CACNB2Q08289 660 aaPredicted RBP16.55■□□□□ 0.24
PDLIM2-213ENST00000448520 MAP2K5Q13163 448 aa16.55■□□□□ 0.24
PDLIM2-213ENST00000448520 ZYXQ15942 572 aaKnown RBP16.55■□□□□ 0.24
PDLIM2-213ENST00000448520 POTEEQ6S8J3 1075 aa16.55■□□□□ 0.24
PDLIM2-213ENST00000448520 APBA2Q99767 749 aa16.55■□□□□ 0.24
PDLIM2-213ENST00000448520 HOXC10Q9NYD6 342 aa16.55■□□□□ 0.24
PDLIM2-213ENST00000448520 ZBTB47Q9UFB7 747 aaPredicted RBP16.55■□□□□ 0.24
PDLIM2-213ENST00000448520 SLC15A5A6NIM6 579 aa16.54■□□□□ 0.24
PDLIM2-213ENST00000448520 PDE6AP16499 860 aa16.54■□□□□ 0.24
PDLIM2-213ENST00000448520 VCAM1P19320 739 aa16.54■□□□□ 0.24
PDLIM2-213ENST00000448520 SHMT1P34896 483 aa16.54■□□□□ 0.24
PDLIM2-213ENST00000448520 ACER1Q8TDN7 264 aa16.54■□□□□ 0.24
PDLIM2-213ENST00000448520 MCM9Q9NXL9 1143 aa16.54■□□□□ 0.24
PDLIM2-213ENST00000448520 SZT2Q5T011 3432 aa16.54■□□□□ 0.24
PDLIM2-213ENST00000448520 SALL3Q9BXA9 1300 aa16.53■□□□□ 0.24
PDLIM2-213ENST00000448520 CNMDO75829 334 aa16.53■□□□□ 0.24
PDLIM2-213ENST00000448520 PTPREP23469 700 aa16.53■□□□□ 0.24
PDLIM2-213ENST00000448520 MFSD14CQ5VZR4 134 aa16.53■□□□□ 0.24
PDLIM2-213ENST00000448520 C7orf61Q8IZ16 206 aa16.53■□□□□ 0.24
PDLIM2-213ENST00000448520 GDF15Q99988 308 aa16.53■□□□□ 0.24
PDLIM2-213ENST00000448520 IVNS1ABPQ9Y6Y0 642 aa16.53■□□□□ 0.24
PDLIM2-213ENST00000448520 ALPK3Q96L96 1907 aa16.53■□□□□ 0.24
PDLIM2-213ENST00000448520 ZNF532Q9HCE3 1301 aa16.52■□□□□ 0.24
PDLIM2-213ENST00000448520 GOLIM4O00461 696 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms