RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CYP2D7A0A087X1C5 515 aa25.03■■□□□ 1.6
SDC1-205ENST00000447124 GPRC5AQ8NFJ5 357 aa25.03■■□□□ 1.6
SDC1-205ENST00000447124 DDX60LQ5H9U9 1706 aaKnown RBP25.03■■□□□ 1.6
SDC1-205ENST00000447124 A0A1W2PRG0 241 aa25.02■■□□□ 1.6
SDC1-205ENST00000447124 INHAP05111 366 aa25.02■■□□□ 1.6
SDC1-205ENST00000447124 GJA8P48165 433 aa25.02■■□□□ 1.6
SDC1-205ENST00000447124 CATSPERGQ6ZRH7 1159 aa25.02■■□□□ 1.6
SDC1-205ENST00000447124 FEZ1Q99689 392 aa25.02■■□□□ 1.6
SDC1-205ENST00000447124 TAOK2Q9UL54 1235 aa25.02■■□□□ 1.6
SDC1-205ENST00000447124 USP17L15C9J2P7 530 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 USP17L13C9JLJ4 530 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 USP17L12C9JPN9 530 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 USP17L11C9JVI0 530 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 USP17L21D6R901 530 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 USP17L18D6R9N7 530 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 USP17L22D6RA61 530 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 USP17L17D6RBQ6 530 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 USP17L19D6RCP7 530 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 USP17L20D6RJB6 530 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 USP14P54578 494 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 USP17L24Q0WX57 530 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 C12orf60Q5U649 245 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 ZSCAN25Q6NSZ9 544 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 SIAH1Q8IUQ4 282 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 SLC4A4Q9Y6R1 1079 aa25.01■■□□□ 1.59
SDC1-205ENST00000447124 KBTBD3Q8NAB2 608 aa25■■□□□ 1.59
SDC1-205ENST00000447124 OTUD7AQ8TE49 926 aaPredicted RBP25■■□□□ 1.59
SDC1-205ENST00000447124 STRBPQ96SI9 672 aaKnown RBP25■■□□□ 1.59
SDC1-205ENST00000447124 CRBNQ96SW2 442 aa25■■□□□ 1.59
SDC1-205ENST00000447124 NAV1Q8NEY1 1877 aa25■■□□□ 1.59
SDC1-205ENST00000447124 MPHOSPH10O00566 681 aaKnown RBP24.99■■□□□ 1.59
SDC1-205ENST00000447124 CNMDO75829 334 aa24.99■■□□□ 1.59
SDC1-205ENST00000447124 AKR1B1P15121 316 aa24.99■■□□□ 1.59
SDC1-205ENST00000447124 VCAM1P19320 739 aa24.99■■□□□ 1.59
SDC1-205ENST00000447124 ERVK-9P63128 1117 aa24.99■■□□□ 1.59
SDC1-205ENST00000447124 ERVK-24P63145 666 aa24.99■■□□□ 1.59
SDC1-205ENST00000447124 NKX2-3Q8TAU0 364 aa24.99■■□□□ 1.59
SDC1-205ENST00000447124 OSBP2Q969R2 916 aa24.99■■□□□ 1.59
SDC1-205ENST00000447124 PORCNQ9H237 461 aa24.99■■□□□ 1.59
SDC1-205ENST00000447124 SWAP70Q9UH65 585 aa24.99■■□□□ 1.59
SDC1-205ENST00000447124 CDK8P49336 464 aa24.98■■□□□ 1.59
SDC1-205ENST00000447124 CTR9Q6PD62 1173 aa24.98■■□□□ 1.59
SDC1-205ENST00000447124 UBE2Q1Q7Z7E8 422 aa24.98■■□□□ 1.59
SDC1-205ENST00000447124 U2AF1L4Q8WU68 220 aaKnown RBP24.98■■□□□ 1.59
SDC1-205ENST00000447124 PAGR1Q9BTK6 254 aa24.98■■□□□ 1.59
SDC1-205ENST00000447124 SGPL1O95470 568 aa24.97■■□□□ 1.59
SDC1-205ENST00000447124 TRIM32Q13049 653 aa24.97■■□□□ 1.59
SDC1-205ENST00000447124 KIAA1755Q5JYT7 1200 aa24.97■■□□□ 1.59
SDC1-205ENST00000447124 GTF3C2Q8WUA4 911 aaPredicted RBP24.97■■□□□ 1.59
SDC1-205ENST00000447124 YTHDC1Q96MU7 727 aaKnown RBP24.97■■□□□ 1.59
SDC1-205ENST00000447124 BAZ2AQ9UIF9 1905 aaKnown RBP24.96■■□□□ 1.59
SDC1-205ENST00000447124 RNF113AO15541 343 aaKnown RBP24.96■■□□□ 1.59
SDC1-205ENST00000447124 CYP2B6P20813 491 aa24.96■■□□□ 1.59
SDC1-205ENST00000447124 TMEM179Q6ZVK1 233 aa24.96■■□□□ 1.59
SDC1-205ENST00000447124 CLEC10AQ8IUN9 316 aa24.96■■□□□ 1.59
SDC1-205ENST00000447124 GPATCH3Q96I76 525 aa24.96■■□□□ 1.59
SDC1-205ENST00000447124 RPAP3Q9H6T3 665 aaPredicted RBP24.96■■□□□ 1.59
SDC1-205ENST00000447124 RABGAP1Q9Y3P9 1069 aa24.96■■□□□ 1.59
SDC1-205ENST00000447124 GSG1L2A8MUP6 293 aa24.95■■□□□ 1.58
SDC1-205ENST00000447124 C16orf86Q6ZW13 317 aa24.95■■□□□ 1.58
SDC1-205ENST00000447124 PI4K2BQ8TCG2 481 aa24.95■■□□□ 1.58
SDC1-205ENST00000447124 USP6NLQ92738 828 aa24.95■■□□□ 1.58
SDC1-205ENST00000447124 PAK6Q9NQU5 681 aaPredicted RBP24.95■■□□□ 1.58
SDC1-205ENST00000447124 BTBD7Q9P203 1132 aa24.95■■□□□ 1.58
SDC1-205ENST00000447124 MAPK4P31152 587 aa24.94■■□□□ 1.58
SDC1-205ENST00000447124 TRIB2Q92519 343 aa24.94■■□□□ 1.58
SDC1-205ENST00000447124 APPBP2Q92624 585 aa24.94■■□□□ 1.58
SDC1-205ENST00000447124 DEFB118Q96PH6 123 aa24.94■■□□□ 1.58
SDC1-205ENST00000447124 NUDT12Q9BQG2 462 aa24.94■■□□□ 1.58
SDC1-205ENST00000447124 MYH7P12883 1935 aa24.94■■□□□ 1.58
SDC1-205ENST00000447124 PLXNB2O15031 1838 aa24.93■■□□□ 1.58
SDC1-205ENST00000447124 SPDYE16A6NNV3 312 aaPredicted RBP24.93■■□□□ 1.58
SDC1-205ENST00000447124 SLC34A2O95436 690 aa24.93■■□□□ 1.58
SDC1-205ENST00000447124 MORN1Q5T089 497 aa24.93■■□□□ 1.58
SDC1-205ENST00000447124 LBX2Q6XYB7 198 aa24.93■■□□□ 1.58
SDC1-205ENST00000447124 GPR142Q7Z601 462 aa24.93■■□□□ 1.58
SDC1-205ENST00000447124 CCDC17Q96LX7 622 aa24.93■■□□□ 1.58
SDC1-205ENST00000447124 TTC41PQ6P2S7 1318 aa24.92■■□□□ 1.58
SDC1-205ENST00000447124 HMGCRP04035 888 aa24.92■■□□□ 1.58
SDC1-205ENST00000447124 PLEKHH3Q7Z736 793 aa24.92■■□□□ 1.58
SDC1-205ENST00000447124 DDRGK1Q96HY6 314 aa24.92■■□□□ 1.58
SDC1-205ENST00000447124 CRISPLD2Q9H0B8 497 aa24.92■■□□□ 1.58
SDC1-205ENST00000447124 M0R2C6 588 aa24.91■■□□□ 1.58
SDC1-205ENST00000447124 TFRCP02786 760 aaKnown RBP24.91■■□□□ 1.58
SDC1-205ENST00000447124 XRCC5P13010 732 aaKnown RBP24.91■■□□□ 1.58
SDC1-205ENST00000447124 SBK1Q52WX2 424 aa24.91■■□□□ 1.58
SDC1-205ENST00000447124 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.91■■□□□ 1.58
SDC1-205ENST00000447124 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.91■■□□□ 1.58
SDC1-205ENST00000447124 TMX2Q9Y320 296 aa24.91■■□□□ 1.58
SDC1-205ENST00000447124 CEP290O15078 2479 aa24.91■■□□□ 1.58
SDC1-205ENST00000447124 SALL3Q9BXA9 1300 aa24.9■■□□□ 1.58
SDC1-205ENST00000447124 ZFYP08048 801 aaPredicted RBP24.9■■□□□ 1.58
SDC1-205ENST00000447124 COG2Q14746 738 aa24.9■■□□□ 1.58
SDC1-205ENST00000447124 CCAR1Q8IX12 1150 aaKnown RBP24.9■■□□□ 1.58
SDC1-205ENST00000447124 AMOTL1Q8IY63 956 aa24.9■■□□□ 1.58
SDC1-205ENST00000447124 SEC62Q99442 399 aaKnown RBP24.9■■□□□ 1.58
SDC1-205ENST00000447124 GPAA1O43292 621 aa24.89■■□□□ 1.58
SDC1-205ENST00000447124 GLRX3O76003 335 aaKnown RBP24.89■■□□□ 1.58
SDC1-205ENST00000447124 ICA1Q05084 483 aa24.89■■□□□ 1.58
SDC1-205ENST00000447124 ANKRD45Q5TZF3 282 aa24.89■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms