RNA–Protein interactions for RNA: ENST00000446876.1

HDAC4-204, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-204ENST00000446876 EMILIN3Q9NT22 766 aa17.73■□□□□ 0.43
HDAC4-204ENST00000446876 TMOD4Q9NZQ9 345 aa17.73■□□□□ 0.43
HDAC4-204ENST00000446876 MGAMO43451 1857 aa17.72■□□□□ 0.43
HDAC4-204ENST00000446876 MCMDC2Q4G0Z9 681 aa17.72■□□□□ 0.43
HDAC4-204ENST00000446876 NACAP1Q9BZK3 213 aa17.72■□□□□ 0.43
HDAC4-204ENST00000446876 SLC45A1Q9Y2W3 748 aa17.72■□□□□ 0.43
HDAC4-204ENST00000446876 TRIM17Q9Y577 477 aa17.72■□□□□ 0.43
HDAC4-204ENST00000446876 A0A1W2PRG0 241 aa17.71■□□□□ 0.43
HDAC4-204ENST00000446876 C19orf81C9J6K1 198 aa17.71■□□□□ 0.43
HDAC4-204ENST00000446876 PRDM1O75626 825 aa17.71■□□□□ 0.43
HDAC4-204ENST00000446876 IFFO2Q5TF58 517 aa17.71■□□□□ 0.43
HDAC4-204ENST00000446876 USP17L2Q6R6M4 530 aa17.71■□□□□ 0.43
HDAC4-204ENST00000446876 TMEM179Q6ZVK1 233 aa17.71■□□□□ 0.43
HDAC4-204ENST00000446876 OTOP1Q7RTM1 612 aa17.71■□□□□ 0.43
HDAC4-204ENST00000446876 CCDC171Q6TFL3 1326 aa17.71■□□□□ 0.42
HDAC4-204ENST00000446876 BCRP11274 1271 aa17.7■□□□□ 0.42
HDAC4-204ENST00000446876 RASA1P20936 1047 aa17.7■□□□□ 0.42
HDAC4-204ENST00000446876 CTGFP29279 349 aa17.7■□□□□ 0.42
HDAC4-204ENST00000446876 PPARAQ07869 468 aa17.7■□□□□ 0.42
HDAC4-204ENST00000446876 CWC27Q6UX04 472 aaKnown RBP17.7■□□□□ 0.42
HDAC4-204ENST00000446876 SMCR8Q8TEV9 937 aaPredicted RBP17.7■□□□□ 0.42
HDAC4-204ENST00000446876 CCDC17Q96LX7 622 aa17.7■□□□□ 0.42
HDAC4-204ENST00000446876 ASCC2Q9H1I8 757 aaPredicted RBP17.7■□□□□ 0.42
HDAC4-204ENST00000446876 DIAPH3Q9NSV4 1193 aa17.7■□□□□ 0.42
HDAC4-204ENST00000446876 TAOK2Q9UL54 1235 aa17.7■□□□□ 0.42
HDAC4-204ENST00000446876 LACTBP83111 547 aaPredicted RBP17.69■□□□□ 0.42
HDAC4-204ENST00000446876 ICA1Q05084 483 aa17.69■□□□□ 0.42
HDAC4-204ENST00000446876 CTDSPL2Q05D32 466 aa17.69■□□□□ 0.42
HDAC4-204ENST00000446876 CENPQQ7L2Z9 268 aaPredicted RBP17.69■□□□□ 0.42
HDAC4-204ENST00000446876 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.69■□□□□ 0.42
HDAC4-204ENST00000446876 KIAA1683Q9H0B3 1180 aa17.69■□□□□ 0.42
HDAC4-204ENST00000446876 EFCC1Q9HA90 598 aa17.69■□□□□ 0.42
HDAC4-204ENST00000446876 MKNK2Q9HBH9 465 aa17.69■□□□□ 0.42
HDAC4-204ENST00000446876 PNMA3Q9UL41 463 aa17.69■□□□□ 0.42
HDAC4-204ENST00000446876 MYH4Q9Y623 1939 aa17.68■□□□□ 0.42
HDAC4-204ENST00000446876 PEX10O60683 326 aa17.68■□□□□ 0.42
HDAC4-204ENST00000446876 HSPD1P10809 573 aaKnown RBP17.68■□□□□ 0.42
HDAC4-204ENST00000446876 VCAM1P19320 739 aa17.68■□□□□ 0.42
HDAC4-204ENST00000446876 OSBPP22059 807 aa17.68■□□□□ 0.42
HDAC4-204ENST00000446876 IRX3P78415 501 aaPredicted RBP17.68■□□□□ 0.42
HDAC4-204ENST00000446876 PABPC4Q13310 644 aaKnown RBP eCLIP17.68■□□□□ 0.42
HDAC4-204ENST00000446876 TICAM2Q86XR7 235 aa17.68■□□□□ 0.42
HDAC4-204ENST00000446876 SIAH1Q8IUQ4 282 aa17.68■□□□□ 0.42
HDAC4-204ENST00000446876 ANKRD13CQ8N6S4 541 aa17.68■□□□□ 0.42
HDAC4-204ENST00000446876 C12orf42Q96LP6 360 aa17.68■□□□□ 0.42
HDAC4-204ENST00000446876 IL25Q9H293 177 aa17.68■□□□□ 0.42
HDAC4-204ENST00000446876 INCENPQ9NQS7 918 aa17.68■□□□□ 0.42
HDAC4-204ENST00000446876 TACC3Q9Y6A5 838 aa17.68■□□□□ 0.42
HDAC4-204ENST00000446876 NEFLP07196 543 aa17.67■□□□□ 0.42
HDAC4-204ENST00000446876 USP14P54578 494 aa17.67■□□□□ 0.42
HDAC4-204ENST00000446876 ATP2B2Q01814 1243 aa17.67■□□□□ 0.42
HDAC4-204ENST00000446876 KIAA1755Q5JYT7 1200 aa17.67■□□□□ 0.42
HDAC4-204ENST00000446876 LAMA4Q16363 1823 aa17.67■□□□□ 0.42
HDAC4-204ENST00000446876 HIP1O00291 1037 aa17.66■□□□□ 0.42
HDAC4-204ENST00000446876 FGAP02671 866 aa17.66■□□□□ 0.42
HDAC4-204ENST00000446876 EEF2P13639 858 aaKnown RBP17.66■□□□□ 0.42
HDAC4-204ENST00000446876 HOXA7P31268 230 aaPredicted RBP17.66■□□□□ 0.42
HDAC4-204ENST00000446876 PSMC4P43686 418 aa17.66■□□□□ 0.42
HDAC4-204ENST00000446876 KIF22Q14807 665 aa17.66■□□□□ 0.42
HDAC4-204ENST00000446876 ALX1Q15699 326 aa17.66■□□□□ 0.42
HDAC4-204ENST00000446876 FBXO46Q6PJ61 603 aaPredicted RBP17.66■□□□□ 0.42
HDAC4-204ENST00000446876 TRIM47Q96LD4 638 aa17.66■□□□□ 0.42
HDAC4-204ENST00000446876 P2RX7Q99572 595 aaKnown RBP17.66■□□□□ 0.42
HDAC4-204ENST00000446876 ARHGEF10LQ9HCE6 1279 aa17.66■□□□□ 0.42
HDAC4-204ENST00000446876 HPS5Q9UPZ3 1129 aa17.66■□□□□ 0.42
HDAC4-204ENST00000446876 PARP14Q460N5 1801 aa17.65■□□□□ 0.42
HDAC4-204ENST00000446876 CCDC85CA6NKD9 419 aa17.65■□□□□ 0.42
HDAC4-204ENST00000446876 HERVK_113P62684 666 aa17.65■□□□□ 0.42
HDAC4-204ENST00000446876 PKN2Q16513 984 aaKnown RBP17.65■□□□□ 0.42
HDAC4-204ENST00000446876 FAM47AQ5JRC9 791 aa17.65■□□□□ 0.42
HDAC4-204ENST00000446876 SPICE1Q8N0Z3 855 aa17.65■□□□□ 0.42
HDAC4-204ENST00000446876 CCDC136Q96JN2 1154 aa17.65■□□□□ 0.42
HDAC4-204ENST00000446876 RPAP3Q9H6T3 665 aaPredicted RBP17.65■□□□□ 0.42
HDAC4-204ENST00000446876 KANSL2Q9H9L4 492 aa17.65■□□□□ 0.42
HDAC4-204ENST00000446876 PTPN22Q9Y2R2 807 aa17.65■□□□□ 0.42
HDAC4-204ENST00000446876 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.65■□□□□ 0.42
HDAC4-204ENST00000446876 DOCK3Q8IZD9 2030 aa17.65■□□□□ 0.42
HDAC4-204ENST00000446876 RLFQ13129 1914 aa17.64■□□□□ 0.42
HDAC4-204ENST00000446876 CENPBP07199 599 aaPredicted RBP17.64■□□□□ 0.41
HDAC4-204ENST00000446876 SLC3A2P08195 630 aaKnown RBP17.64■□□□□ 0.41
HDAC4-204ENST00000446876 HAND2P61296 217 aa17.64■□□□□ 0.41
HDAC4-204ENST00000446876 PDE4BQ07343 736 aa17.64■□□□□ 0.41
HDAC4-204ENST00000446876 POTEEQ6S8J3 1075 aa17.64■□□□□ 0.41
HDAC4-204ENST00000446876 ZNF444Q8N0Y2 327 aaPredicted RBP17.64■□□□□ 0.41
HDAC4-204ENST00000446876 TXNRD2Q9NNW7 524 aa17.64■□□□□ 0.41
HDAC4-204ENST00000446876 TMX2Q9Y320 296 aa17.64■□□□□ 0.41
HDAC4-204ENST00000446876 PTCH2Q9Y6C5 1203 aa17.64■□□□□ 0.41
HDAC4-204ENST00000446876 IGKV6D-41A0A0C4DH26 115 aa17.63■□□□□ 0.41
HDAC4-204ENST00000446876 USP17L15C9J2P7 530 aa17.63■□□□□ 0.41
HDAC4-204ENST00000446876 USP17L13C9JLJ4 530 aa17.63■□□□□ 0.41
HDAC4-204ENST00000446876 USP17L11C9JVI0 530 aa17.63■□□□□ 0.41
HDAC4-204ENST00000446876 USP17L18D6R9N7 530 aa17.63■□□□□ 0.41
HDAC4-204ENST00000446876 USP17L22D6RA61 530 aa17.63■□□□□ 0.41
HDAC4-204ENST00000446876 USP17L17D6RBQ6 530 aa17.63■□□□□ 0.41
HDAC4-204ENST00000446876 USP17L19D6RCP7 530 aa17.63■□□□□ 0.41
HDAC4-204ENST00000446876 USP17L20D6RJB6 530 aa17.63■□□□□ 0.41
HDAC4-204ENST00000446876 FMNL1O95466 1100 aaPredicted RBP17.63■□□□□ 0.41
HDAC4-204ENST00000446876 GCLCP48506 637 aaPredicted RBP17.63■□□□□ 0.41
HDAC4-204ENST00000446876 MFAP1P55081 439 aaKnown RBP17.63■□□□□ 0.41
HDAC4-204ENST00000446876 USP17L24Q0WX57 530 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms